RID: 58FK5P29013 Job Title:RNJPYRAB Program: BLASTP Database: swissprot Non-redundant UniProtKB/SwissProt sequences Query #1: RNJPYRAB Query ID: lcl|Query_7041569 Length: 451 Sequences producing significant alignments: Scientific Common Max Total Query E Per. Acc. Description Name Name Taxid Score Score cover Value Ident Len Accession RecName: Full=Ribonuclease J; Short=RNase J; AltName:... Pyrococcus a... NA 272844 918 918 100% 0.0 100.00 451 Q9V076.1 RecName: Full=Ribonuclease J; Short=RNase J [Methanocaldococcu... Methanocaldo... NA 243232 458 458 96% 2e-158 51.70 448 Q58271.1 RecName: Full=Ribonuclease J; Short=RNase J [Halobacterium... Halobacteriu... NA 64091 375 375 97% 5e-126 44.12 448 Q9HQI4.2 RecName: Full=Ribonuclease J; Short=RNase J [Synechocystis sp.... Synechocysti... NA 1111708 222 222 98% 1e-64 33.33 640 P54123.1 RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus... Staphylococc... NA 273036 217 217 93% 2e-63 35.42 565 Q2YX35.1 RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus... Staphylococc... NA 176279 216 216 97% 4e-63 34.67 560 Q5HQ80.1 RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus... Staphylococc... NA 367830 216 216 93% 6e-63 35.19 565 Q2FHZ1.1 RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus... Staphylococc... NA 342451 216 216 97% 1e-62 34.89 620 Q49WL3.1 RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus... Staphylococc... NA 279808 212 212 97% 1e-61 34.44 559 Q4L5A3.1 RecName: Full=Ribonuclease J 1; Short=RNase J 1 [Streptococcus... Streptococcu... NA 198466 208 208 97% 6e-60 34.07 560 Q8K5W8.1 RecName: Full=Ribonuclease J1; Short=RNase J1 [Bacillus subtil... Bacillus sub... NA 224308 201 201 97% 2e-57 32.52 555 Q45493.1 RecName: Full=Ribonuclease J; Short=RNase J [Mycobacterium... Mycobacteriu... NA 83331 190 190 97% 2e-53 30.20 558 P9WGZ8.1 RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus... Staphylococc... NA 367830 186 186 97% 8e-52 32.46 557 Q2FHG3.2 RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus... Staphylococc... NA 282458 186 186 97% 8e-52 32.46 557 Q6GHG0.1 RecName: Full=Ribonuclease J2; Short=RNase J2 [Bacillus subtil... Bacillus sub... NA 224308 184 184 97% 3e-51 31.69 555 O31760.3 RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus... Staphylococc... NA 342451 183 183 97% 8e-51 32.01 557 Q49X63.1 RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus... Staphylococc... NA 176279 181 181 97% 4e-50 31.63 557 Q5HPR6.2 RecName: Full=Ribonuclease J; Short=RNase J [Mycolicibacterium... Mycolicibact... NA 246196 181 181 96% 4e-50 30.53 558 A0QVT2.1 RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus... Staphylococc... NA 279808 181 181 97% 5e-50 31.63 557 Q4L5X8.1 RecName: Full=Ribonuclease J; Short=RNase J [Helicobacter pylo... Helicobacter... NA 85962 181 181 97% 3e-49 31.04 689 P56185.1 RecName: Full=Ribonuclease J; Short=RNase J [Helicobacter pylo... Helicobacter... NA 85963 181 181 97% 3e-49 31.04 692 Q9ZJI6.1 RecName: Full=Ribonuclease J [Helicobacter pylori B128] Helicobacter... NA 544406 181 181 97% 5e-49 31.04 691 B9XZG7.1 RecName: Full=Ribonuclease J; Short=RNase J [Thermus... Thermus ther... NA 262724 177 177 92% 2e-48 32.56 573 Q72JJ7.1 RecName: Full=Ribonuclease J 2; Short=RNase J 2 [Streptococcus... Streptococcu... NA 198466 171 171 93% 4e-46 31.62 553 Q8K7S6.1 RecName: Full=Ribonuclease J; Short=RNase J [Corynebacterium... Corynebacter... NA 196627 166 166 97% 8e-44 31.42 718 P54122.2 RecName: Full=Ribonuclease J; Short=RNase J [Mycoplasmoides... Mycoplasmoid... NA 243273 163 163 96% 2e-43 31.13 569 P47385.1 RecName: Full=Ribonuclease J; Short=RNase J [Sinorhizobium... Sinorhizobiu... NA 1286640 159 159 97% 5e-42 28.10 564 M4MR97.1 RecName: Full=Ribonuclease J; Short=RNase J [Mycoplasmoides... Mycoplasmoid... NA 272634 158 158 96% 2e-41 30.68 569 P75497.1 RecName: Full=Ribonuclease J; Short=RNase J; AltName:... Arabidopsis ... thale cress 3702 153 153 96% 8e-39 27.58 911 Q84W56.1 RecName: Full=Uncharacterized protein MJ0047 [Methanocaldococc... Methanocaldo... NA 243232 50.8 50.8 92% 1e-05 22.71 428 Q60355.2 RecName: Full=Uncharacterized protein aq_2135 [Aquifex aeolicu... Aquifex aeol... NA 224324 48.1 48.1 38% 4e-05 26.40 211 O67893.1 RecName: Full=Integrator complex subunit 11; Short=Int11;... Danio rerio zebrafish 7955 45.8 45.8 97% 6e-04 21.18 598 Q503E1.1 RecName: Full=Hydroxyacylglutathione hydrolase; AltName:... Buchnera aph... NA 198804 43.5 43.5 10% 0.002 36.07 250 Q08889.1 RecName: Full=Uncharacterized protein MJ0162 [Methanocaldococc... Methanocaldo... NA 243232 43.5 43.5 56% 0.002 26.02 421 Q57626.1 RecName: Full=Ribonuclease TTHA0252 [Thermus thermophilus HB8] Thermus ther... NA 300852 43.5 43.5 37% 0.003 26.23 431 Q5SLP1.1 RecName: Full=Cleavage and polyadenylation specificity factor ... Drosophila m... fruit fly 7227 43.5 43.5 36% 0.003 23.49 684 Q9VE51.2 RecName: Full=Hydroxyacylglutathione hydrolase; AltName:... Yersinia pes... NA 386656 42.4 42.4 6% 0.004 55.17 251 A4TL56.1 RecName: Full=Hydroxyacylglutathione hydrolase; AltName:... Yersinia pestis NA 632 42.0 42.0 6% 0.005 55.17 251 Q0WHW5.1 RecName: Full=Hydroxyacylglutathione hydrolase; AltName:... Yersinia pse... NA 349747 42.0 42.0 6% 0.005 55.17 251 A7FFK5.1 RecName: Full=Uncharacterized protein MJ1236 [Methanocaldococc... Methanocaldo... NA 243232 42.7 42.7 39% 0.006 25.25 634 Q58633.1 RecName: Full=Hydroxyacylglutathione hydrolase; AltName:... Pectobacteri... NA 561230 41.6 41.6 9% 0.006 38.64 251 C6DC67.1 RecName: Full=Integrator complex subunit 11 homolog... Dictyosteliu... NA 44689 42.4 42.4 89% 0.007 22.11 744 Q54YL3.1 RecName: Full=Hydroxyacylglutathione hydrolase GloC; AltName:... Escherichia ... NA 83333 41.2 41.2 18% 0.008 29.55 215 P75849.1 RecName: Full=UPF0173 metal-dependent hydrolase APE_1117... Aeropyrum pe... NA 272557 40.8 40.8 23% 0.011 30.43 242 Q9YCZ5.1 RecName: Full=Hydroxyacylglutathione hydrolase; AltName:... Pectobacteri... NA 218491 40.4 40.4 8% 0.016 38.46 251 Q6D1V5.1 RecName: Full=Hydroxyacylglutathione hydrolase; AltName:... Actinobacill... NA 339671 40.0 40.0 6% 0.018 48.39 233 A6VNK4.1 RecName: Full=3',5'-cyclic-nucleotide phosphodiesterase;... Aliivibrio f... NA 668 40.4 40.4 37% 0.021 23.56 330 Q56686.1 RecName: Full=Hydroxyacylglutathione hydrolase; AltName:... Yersinia ent... NA 393305 40.0 40.0 6% 0.021 51.72 251 A1JKA9.1 RecName: Full=Cleavage and polyadenylation specificity factor... Arabidopsis ... thale cress 3702 40.4 40.4 45% 0.031 21.59 613 Q8GUU3.2 RecName: Full=Hydroxyacylglutathione hydrolase; AltName:... Candidatus H... NA 572265 39.7 39.7 6% 0.033 51.72 249 C4K7Z9.1 RecName: Full=Integrator complex subunit 11; Short=Int11;... Bos taurus cattle 9913 40.0 40.0 97% 0.039 21.96 599 Q2YDM2.2 RecName: Full=Hydroxyacylglutathione hydrolase; AltName:... [Mannheimia]... NA 221988 38.9 38.9 9% 0.043 40.91 236 Q65U07.1 Alignments: >RecName: Full=Ribonuclease J; Short=RNase J; AltName: Full=Pab-RNase J [Pyrococcus abyssi GE5] Sequence ID: Q9V076.1 Length: 451 Range 1: 1 to 451 Score:918 bits(2372), Expect:0.0, Method:Compositional matrix adjust., Identities:451/451(100%), Positives:451/451(100%), Gaps:0/451(0%) Query 1 MWEEINMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDL 60 MWEEINMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDL Sbjct 1 MWEEINMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDL 60 Query 61 RKLGAIPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIK 120 RKLGAIPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIK Sbjct 61 RKLGAIPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIK 120 Query 121 GEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKF 180 GEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKF Sbjct 121 GEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKF 180 Query 181 DNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEA 240 DNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEA Sbjct 181 DNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEA 240 Query 241 DGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSP 300 DGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSP Sbjct 241 DGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSP 300 Query 301 NAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPL 360 NAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPL Sbjct 301 NAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPL 360 Query 361 NVAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYA 420 NVAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYA Sbjct 361 NVAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYA 420 Query 421 ELAEEEGYMIGKEVFISRNGHVVEIPGSLEG 451 ELAEEEGYMIGKEVFISRNGHVVEIPGSLEG Sbjct 421 ELAEEEGYMIGKEVFISRNGHVVEIPGSLEG 451 >RecName: Full=Ribonuclease J; Short=RNase J [Methanocaldococcus jannaschii DSM 2661] Sequence ID: Q58271.1 Length: 448 Range 1: 3 to 442 Score:458 bits(1179), Expect:2e-158, Method:Compositional matrix adjust., Identities:228/441(52%), Positives:314/441(71%), Gaps:6/441(1%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 ++I +GGYEEVG+NMTAV +GE++I+DMGIRLDRVLIHED + K+ S +L + G IP Sbjct 3 LEIIAIGGYEEVGRNMTAVNVDGEIIILDMGIRLDRVLIHEDTDISKLHSLELIEKGIIP 62 Query 68 DDRPIRN--KKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 +D ++N +V AI LSHGHLDHIGAV KLA Y + PI GTPYTI L K EI E+ F Sbjct 63 NDTVMKNIEGEVKAIVLSHGHLDHIGAVPKLAHRY-NAPIIGTPYTIELVKREILSEKKF 121 Query 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185 +V NPL N GE + ++ N+ +EF++ITHSIP S + V+HTP G++VY D+KFDN Sbjct 122 DVRNPLIVLNAGESIDLTPNITLEFIRITHSIPDSVLPVLHTPYGSIVYGNDFKFDNFPV 181 Query 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIA 245 GERPDY+ +K++GK GV I+E+TR+ E KTP E +A LL++ L + G+I Sbjct 182 VGERPDYRAIKKVGKNGVLCFISETTRINHEGKTPPEIIASGLLKNDLLAADNDKHGIIV 241 Query 246 TTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKM-KGSRVLRSPNAVS 304 TTF+SHIAR++ + +IA KMGR + +GRS+ ++ GIA+ +GL+K + R+ P+++ Sbjct 242 TTFSSHIARIKSITDIAEKMGRTPVLLGRSMMRFCGIAQDIGLVKFPEDLRIYGDPSSIE 301 Query 305 KVLKE-VSQARENYLLIVTGHQGEPGAILTRMA-NGELYDIGPRDTVVFSAGVIPNPLNV 362 LK V + +E YL+I TGHQGE GA+L+RMA N Y D VVFSA IPNP+N Sbjct 302 MALKNIVKEGKEKYLIIATGHQGEEGAVLSRMATNKTPYKFEKYDCVVFSADPIPNPMNA 361 Query 363 AQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAEL 422 AQRY LE++L++ GVR+ K HVSGHA+KEDHR ++R LNPE+I+P+HG+F + Y +L Sbjct 362 AQRYMLESRLKLLGVRIFKGAHVSGHAAKEDHRDMLRWLNPEHIIPSHGDFNLTAEYTKL 421 Query 423 AEEEGYMIGKEVFISRNGHVV 443 AEEEGY +G++V + RNG + Sbjct 422 AEEEGYRLGEDVHLLRNGQCL 442 >RecName: Full=Ribonuclease J; Short=RNase J [Halobacterium salinarum NRC-1] Sequence ID: Q9HQI4.2 Length: 448 Range 1: 3 to 446 Score:375 bits(964), Expect:5e-126, Method:Compositional matrix adjust., Identities:199/451(44%), Positives:294/451(65%), Gaps:20/451(4%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 I+I T+GGYEEVG+ MTAV ++VI DMG+ L +VL+H++VE +KM S DL +GAIP Sbjct 3 IEIATIGGYEEVGRQMTAVRAGDDIVIFDMGLNLSKVLVHDNVETEKMHSLDLIDMGAIP 62 Query 68 DDRPIRN--KKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 DDR + + V AI +HGHLDHIGA+ KLA Y D PI G+P+TI L K EI+ E+ F Sbjct 63 DDRVMSDLEGDVKAIVPTHGHLDHIGAISKLAHRY-DAPIVGSPFTIELVKGEIESEQKF 121 Query 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185 V N L + G +++ + +EFV +THSI + V+HTPEGAVVY D + D++ P Sbjct 122 GVENDLVKMEAGGTMEIGDRCELEFVHVTHSIIDAINPVLHTPEGAVVYGLDKRMDHD-P 180 Query 186 YGERP-DYKRLKELGKEGVKVL--IAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG 242 E P D +R +E+G+EG VL I + T ++ +TPSE+ A+ L+D G Sbjct 181 VLEDPIDMERFREIGREGEGVLCYIEDCTNAGKKGRTPSESTARRHLKDVLTSVADYDGG 240 Query 243 LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIK------MKGSRV 296 ++ATTF+SHI+R+ L+E A ++GR+ I +GRS+ +Y+G A+++G + M G R Sbjct 241 IVATTFSSHISRVSSLVEFAKEIGREPILLGRSMERYSGTAERMGRVNFPDDLGMFGHR- 299 Query 297 LRSPNAVSKVLKEV-SQARENYLLIVTGHQGEPGAILTRMANGEL-YDIGPRDTVVFSAG 354 +V + K V ++ +EN+L IVTGHQGEP A+LTRM GE YDI D ++FSA Sbjct 300 ----KSVDRAFKRVMNEGKENFLPIVTGHQGEPQAMLTRMGRGETPYDIEDGDKIIFSAS 355 Query 355 VIPNPLNVAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFR 414 VIP P N QRY E LRM+G R+ ++HVSGH +E H ++ L P++++PAH + + Sbjct 356 VIPEPTNKGQRYQSEQLLRMQGARIYDDIHVSGHLREEGHYQMLDALQPQHLIPAHQDMK 415 Query 415 MLTHYAELAEEEGYMIGKEVFISRNGHVVEI 445 + YA+LA+ +GY IG+++ ++ NG+ +++ Sbjct 416 GMAPYAKLAKSQGYKIGRDLHMTENGNTIQL 446 >RecName: Full=Ribonuclease J; Short=RNase J [Synechocystis sp. PCC 6803 substr. Kazusa] Sequence ID: P54123.1 Length: 640 Range 1: 6 to 430 Score:222 bits(566), Expect:1e-64, Method:Compositional matrix adjust., Identities:152/456(33%), Positives:249/456(54%), Gaps:43/456(9%) Query 4 EINMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKL 63 + +KI LGG E+GKN EY+ E++++D G+ + D+ + Sbjct 6 QTQALKILPLGGLHEIGKNTCVFEYDDEILLLDAGL--------------AFPTDDMHGV 51 Query 64 GAI-PDDRPIR--NKKVVAIALSHGHLDHIGAVGKLAPHYPDVPI-YGTPYTIRLAKSEI 119 + PD +R +K+ + ++HGH DHIG + + D+PI YG + L + ++ Sbjct 52 NVVLPDMTYLRENREKIKGMVVTHGHEDHIGGIAYHLKQF-DIPIIYGPRLAMALLRDKL 110 Query 120 KGEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYK 179 + E TN L + E+V++ ++ +EF++ THSI S + IHTP G V+++ D+K Sbjct 111 EEAGMLERTN-LQTVSPREMVRLGKSFVVEFIRNTHSIADSYCLAIHTPLGVVMHSGDFK 169 Query 180 FDNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGME 239 D+ GE D +++ E G++GV L+++ST TPSEA L+ F + Sbjct 170 IDHTPIDGEFFDLQKVAEYGEKGVLCLLSDSTNAEVPGITPSEASVIPNLDRVF----SQ 225 Query 240 ADG-LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLR 298 A+G L+ TTFAS + R+ ++ +A K R+ +GRS+ A++LG IK + L Sbjct 226 AEGRLMVTTFASSVHRVNIILSLAQKHQRKVAVVGRSMLNVIAHARKLGYIKCPDN--LF 283 Query 299 SPNAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPR--DTVVFSAGVI 356 P ++ L + Q L++ TG QGEP A +TR++NGE I R DTVVFSA I Sbjct 284 VPLKAARNLPDQQQ-----LILTTGSQGEPLAAMTRISNGEHPQIKIRQGDTVVFSANPI 338 Query 357 P-NPLNVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHG 411 P N + V +L M+G +I + +HVSGHAS+E+H+ L+ + P++ VP HG Sbjct 339 PGNTIAVVNTI---DRLMMQGANVIYGKHQGIHVSGHASQEEHKMLLALTRPKFFVPVHG 395 Query 412 EFRMLTHYAELAEEEGYMIGKEVFISRNGHVVEIPG 447 E RML ++++A+ +G + + + I NG V+E+ G Sbjct 396 EHRMLVKHSQMAQAQG-IPSENIVIVNNGDVIELTG 430 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus aureus RF122] Sequence ID: Q2YX35.1 Length: 565 Range 1: 7 to 407 Score:217 bits(553), Expect:2e-63, Method:Compositional matrix adjust., Identities:153/432(35%), Positives:229/432(53%), Gaps:41/432(9%) Query 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRL-DRVLIHEDVEFQKMSSKDLRKLG 64 N + +Y LGG E+GKN AVEY E+VI+D GI+ D L+ D Sbjct 7 NEVGVYALGGLGEIGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDY-------------- 52 Query 65 AIPD-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGE 122 IPD ++N+ K+V + ++HGH DHIG V L ++PIYG P + L +++++ E Sbjct 53 VIPDYTYLVQNQDKIVGLFITHGHEDHIGGVPFLLKQL-NIPIYGGPLALGLIRNKLE-E 110 Query 123 EYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDN 182 + T L E N +++ S++L I F THSIP++ V++ TPEG VV+ D+KFD Sbjct 111 HHLLRTAKLNEINEDSVIK-SKHLTISFYLTTHSIPETYGVIVDTPEGKVVHTGDFKFDF 169 Query 183 NHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG 242 P G+ + ++ +LG+EGV L+++ST T SE ++ F G Sbjct 170 T-PVGKPANIAKMAQLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIF----RNCKG 224 Query 243 -LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPN 301 +I TFAS+I R+Q+ +E A K R+ + GRS+ I +LG IK + PN Sbjct 225 RIIFATFASNIYRVQQAVEAAIKNNRKIVTFGRSMENNIKIGMELGYIKAPPETFIE-PN 283 Query 302 AVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIPNP 359 ++ V + L++ TG QGEP A L+R+ANG + I P DTVVFS+ IP Sbjct 284 KINTV------PKHELLILCTGSQGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGN 337 Query 360 LNVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRM 415 R L G +I N+H SGH S+ D + ++R++ P+Y +P HGE+RM Sbjct 338 TKSINRTI--NSLYKAGADVIHSKISNIHTSGHGSQGDQQLMLRLIKPKYFLPIHGEYRM 395 Query 416 LTHYAELAEEEG 427 L + E E G Sbjct 396 LKAHGETGVECG 407 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus epidermidis RP62A] Sequence ID: Q5HQ80.1 Length: 560 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus epidermidis ATCC 12228] Sequence ID: Q8CT16.1 Length: 560 Range 1: 7 to 424 Score:216 bits(551), Expect:4e-63, Method:Compositional matrix adjust., Identities:156/450(35%), Positives:233/450(51%), Gaps:42/450(9%) Query 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRL-DRVLIHEDVEFQKMSSKDLRKLG 64 N + +Y LGG EVGKN AVEY E+VI+D GI+ D L+ D Sbjct 7 NEVGVYALGGLGEVGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDY-------------- 52 Query 65 AIPDDRPIRNK--KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGE 122 IPD + K+V + ++HGH DHIG V L +VPIYG P + L +++++ E Sbjct 53 VIPDYTYLEQNQDKIVGLFITHGHEDHIGGVPFLLKQI-NVPIYGGPLALGLIRNKLE-E 110 Query 123 EYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDN 182 + T L+E + +++ S++ I F THSIP++ V++ TPEG +V+ D+KFD Sbjct 111 HHLLRTTELHEIDESSVIK-SKHFEISFYLTTHSIPEAYGVIVDTPEGKIVHTGDFKFDF 169 Query 183 NHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG 242 P GE + ++ +LG EGV L+++ST T SE ++ F G Sbjct 170 T-PVGEPANIAKMAQLGHEGVLCLLSDSTNALVPDFTLSEREVGQNVDKIF----RNCKG 224 Query 243 -LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPN 301 +I TFAS+I R+Q+ +E A K R+ + GRS+ I +LG IK + PN Sbjct 225 RIIFATFASNIYRVQQAVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAPPETFIE-PN 283 Query 302 AVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIPNP 359 ++ V + L++ TG QGEP A L+R+ANG + I P DTVVFS+ IP Sbjct 284 KINSV------PKHELLILCTGSQGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGN 337 Query 360 LNVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRM 415 R L G +I N+H SGH S+ D + ++R++ P+Y +P HGE+RM Sbjct 338 TKSINRTI--NALYKAGADVIHSKISNIHTSGHGSQGDQQLMLRLIQPKYFLPIHGEYRM 395 Query 416 LTHYAELAEEEGYMIGKEVFISRNGHVVEI 445 L + E + G + VFI G V+ + Sbjct 396 LKAHGETGVQCG-VDEDNVFIFDIGDVLAL 424 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus aureus subsp. aureus USA300] Sequence ID: Q2FHZ1.1 Length: 565 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus aureus subsp. aureus NCTC 8325] Sequence ID: Q2FZG9.1 Length: 565 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus aureus subsp. aureus COL] Sequence ID: Q5HGZ5.1 Length: 565 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus aureus subsp. aureus MSSA476] Sequence ID: Q6GAC5.1 Length: 565 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus aureus subsp. aureus MRSA252] Sequence ID: Q6GHZ6.1 Length: 565 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus aureus subsp. aureus MW2] Sequence ID: Q7A171.1 Length: 565 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus aureus subsp. aureus N315] Sequence ID: Q7A682.1 Length: 565 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus aureus subsp. aureus Mu50] Sequence ID: Q99V09.1 Length: 565 Range 1: 7 to 407 Score:216 bits(550), Expect:6e-63, Method:Compositional matrix adjust., Identities:152/432(35%), Positives:228/432(52%), Gaps:41/432(9%) Query 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRL-DRVLIHEDVEFQKMSSKDLRKLG 64 N + +Y LGG E+GKN AVEY E+VI+D GI+ D L+ D Sbjct 7 NEVGVYALGGLGEIGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDY-------------- 52 Query 65 AIPD-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGE 122 IPD ++N+ K+V + ++HGH DHIG V L ++PIYG P + L +++++ E Sbjct 53 VIPDYTYLVQNQDKIVGLFITHGHEDHIGGVPFLLKQL-NIPIYGGPLALGLIRNKLE-E 110 Query 123 EYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDN 182 + T L E N +++ S++ I F THSIP++ V++ TPEG VV+ D+KFD Sbjct 111 HHLLRTAKLNEINEDSVIK-SKHFTISFYLTTHSIPETYGVIVDTPEGKVVHTGDFKFDF 169 Query 183 NHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG 242 P G+ + ++ +LG+EGV L+++ST T SE ++ F G Sbjct 170 T-PVGKPANIAKMAQLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVDKIF----RNCKG 224 Query 243 -LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPN 301 +I TFAS+I R+Q+ +E A K R+ + GRS+ I +LG IK + PN Sbjct 225 RIIFATFASNIYRVQQAVEAAIKNNRKIVTFGRSMENNIKIGMELGYIKAPPETFIE-PN 283 Query 302 AVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIPNP 359 ++ V + L++ TG QGEP A L+R+ANG + I P DTVVFS+ IP Sbjct 284 KINTV------PKHELLILCTGSQGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGN 337 Query 360 LNVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRM 415 R L G +I N+H SGH S+ D + ++R++ P+Y +P HGE+RM Sbjct 338 TKSINRTI--NSLYKAGADVIHSKISNIHTSGHGSQGDQQLMLRLIKPKYFLPIHGEYRM 395 Query 416 LTHYAELAEEEG 427 L + E E G Sbjct 396 LKAHGETGVECG 407 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292] Sequence ID: Q49WL3.1 Length: 620 Range 1: 7 to 424 Score:216 bits(551), Expect:1e-62, Method:Compositional matrix adjust., Identities:157/450(35%), Positives:233/450(51%), Gaps:42/450(9%) Query 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRL-DRVLIHEDVEFQKMSSKDLRKLG 64 N + +Y LGG E+GKN AVEY E+VI+D GI+ D L+ D Sbjct 7 NEVAVYALGGLGEIGKNTYAVEYQDEIVIIDAGIKFPDDNLLGIDY-------------- 52 Query 65 AIPDDRPIRNK--KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGE 122 IPD + K+V + ++HGH DHIG V L +VPIYG P + L +++++ E Sbjct 53 VIPDITYLEQNQDKIVGLFITHGHEDHIGGVPYLLKQI-NVPIYGGPLALGLIRNKLE-E 110 Query 123 EYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDN 182 + T L E + +++ S++ + F THSIP++ V+++TPEG +V+ D+KFD Sbjct 111 HHLLRTTELIEIDESSVIK-SKHFEVSFYLTTHSIPEAYGVIVNTPEGNIVHTGDFKFDF 169 Query 183 NHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG 242 P GE + ++ +LG+EGV L+++ST T SE +E F G Sbjct 170 T-PVGEPANIAKMAKLGEEGVLCLLSDSTNSLVPDFTLSEREVGQNVEKIF----RNCSG 224 Query 243 -LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPN 301 +I TFAS+I R+Q+ +E A K R+ + GRS+ I +LG IK PN Sbjct 225 RIIFATFASNIYRVQQAVEAAIKHNRKIVTFGRSMENNIKIGMELGYIKAP-PETFVEPN 283 Query 302 AVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIPNP 359 ++ V K L++ TG QGEP A L+R+ANG + I P DTVVFS+ IP Sbjct 284 KINTVPKH------ELLILCTGSQGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGN 337 Query 360 LNVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRM 415 R L G +I N+H SGH SK D + ++R+L P++ +P HGE+RM Sbjct 338 TKSINRTI--NSLYRAGAEVIHNKVSNIHTSGHGSKGDQQLMLRLLRPKFFLPIHGEYRM 395 Query 416 LTHYAELAEEEGYMIGKEVFISRNGHVVEI 445 L + + E G + VFI G V+ + Sbjct 396 LKAHGQSGIECG-VDPDNVFIFDIGDVLAL 424 >RecName: Full=Ribonuclease J 1; Short=RNase J1 [Staphylococcus haemolyticus JCSC1435] Sequence ID: Q4L5A3.1 Length: 559 Range 1: 7 to 424 Score:212 bits(540), Expect:1e-61, Method:Compositional matrix adjust., Identities:155/450(34%), Positives:229/450(50%), Gaps:42/450(9%) Query 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRL-DRVLIHEDVEFQKMSSKDLRKLG 64 N + +Y LGG EVGKN A+EY E+VI+D GI+ D L+ D Sbjct 7 NEVGVYALGGLGEVGKNTYAIEYKNEIVIIDAGIKFPDDNLLGIDY-------------- 52 Query 65 AIPDDRPIRNK--KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGE 122 IPD + K+V + ++HGH DHIG V L +VPIYG P + L ++++ E Sbjct 53 VIPDYTYLEQNQDKIVGLFITHGHEDHIGGVPYLLKQI-NVPIYGGPLALGLIRNKLD-E 110 Query 123 EYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDN 182 L E +++ S++ I F THSIP++ V+I TPEG +V+ D+KFD Sbjct 111 HNLLRNASLNEITEDSVIK-SKHFEISFYLTTHSIPEAYGVIIDTPEGKIVHTGDFKFDF 169 Query 183 NHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG 242 P GE + ++ ELGKEGV L+++ST T SE ++ F G Sbjct 170 T-PVGEPANIAKMAELGKEGVLCLLSDSTNALVPDFTLSEREVGQNVDKIF----RNCKG 224 Query 243 -LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPN 301 +I TFAS+I R+Q+ +E A K R+ + GRS+ I +LG IK PN Sbjct 225 RIIFATFASNIYRVQQAVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAP-PETFVEPN 283 Query 302 AVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIPNP 359 ++ + + L++ TG QGEP A L+R+ANG + I P DTVVFS+ IP Sbjct 284 KINNI------PKHELLILCTGSQGEPMAALSRIANGTHKQIKIIPDDTVVFSSSPIPGN 337 Query 360 LNVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRM 415 R L G +I N+H SGH S+ D + ++R++ P+Y +P HGE+RM Sbjct 338 TKSINRTI--NALYKAGADVIHSKISNIHTSGHGSQGDQQLMLRLIQPKYFLPIHGEYRM 395 Query 416 LTHYAELAEEEGYMIGKEVFISRNGHVVEI 445 L + + + G + + VFI G V+ + Sbjct 396 LKAHGQTGVDCG-VKEENVFIFDIGDVLAL 424 >RecName: Full=Ribonuclease J 1; Short=RNase J 1 [Streptococcus pyogenes MGAS315] Sequence ID: Q8K5W8.1 Length: 560 Range 1: 9 to 426 Score:208 bits(529), Expect:6e-60, Method:Compositional matrix adjust., Identities:154/452(34%), Positives:240/452(53%), Gaps:46/452(10%) Query 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLG- 64 N + ++ +GG E+GKN +EY E++IVD GI K DL + Sbjct 9 NEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGI--------------KFPEDDLLGIDY 54 Query 65 AIPDDRPIRNK--KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGE 122 IPD I + +V A+ ++HGH DHIG + L ++PIY P + L + +++ E Sbjct 55 VIPDYSYIVDNLDRVKALVITHGHEDHIGGIPFLLKQ-ANIPIYAGPLALALIRGKLE-E 112 Query 123 EYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDN 182 +YE N+ + +N+++ F + THSIP+ +VIHTP+G ++ D+KFD Sbjct 113 HGLWREATVYEINHNTELTF-KNMSVTFFKTTHSIPEPVGIVIHTPQGKIICTGDFKFDF 171 Query 183 NHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSE-AVAKMLLEDFFLYEGMEAD 241 P G+ D +R+ LG+EGV L+++ST T T SE V + +L+ + EG+ Sbjct 172 T-PVGDPADLQRMAALGEEGVLCLLSDSTNAEIPTFTNSEKVVGQSILK---IIEGIHGR 227 Query 242 GLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKM-KGSRVLRSP 300 +I +FAS+I RLQ+ E A K GR+ GRS+ K +LG IK+ KG+ + S Sbjct 228 -IIFASFASNIYRLQQAAEAAVKTGRKIAVFGRSMEKAIVNGIELGYIKVPKGTFIEPSE 286 Query 301 NAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIPN 358 LK + + L++ TG QGE A L R+ANG + P DTV+FS+ IP Sbjct 287 ------LKNLHASE--VLIMCTGSQGESMAALARIANGTHRQVTLQPGDTVIFSSSPIPG 338 Query 359 PLNVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFR 414 N L ++ GV +I N+H SGH +++ + ++ ++ P+Y +P HGE+R Sbjct 339 --NTTSVNKLINTIQEAGVDVIHGKVNNIHTSGHGGQQEQKLMLSLIKPKYFMPVHGEYR 396 Query 415 MLTHYAELAEEEGYMIGKE-VFISRNGHVVEI 445 M +A LA + G I KE +FI NG V+ + Sbjct 397 MQKIHAGLAMDIG--IPKENIFIMENGDVLAL 426 >RecName: Full=Ribonuclease J1; Short=RNase J1 [Bacillus subtilis subsp. subtilis str. 168] Sequence ID: Q45493.1 Length: 555 Range 1: 11 to 427 Score:201 bits(512), Expect:2e-57, Method:Compositional matrix adjust., Identities:147/452(33%), Positives:239/452(52%), Gaps:48/452(10%) Query 10 IYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRL--DRVLIHEDVEFQKMSSKDLRKLGAIP 67 ++ LGG E+GKN AV++ E+V++D GI+ D +L +++ IP Sbjct 11 VFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELL---GIDY------------VIP 55 Query 68 D-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 D ++N+ K+ + ++HGH DHIG + L ++P+YG I L +++++ Sbjct 56 DYTYLVKNEDKIKGLFITHGHEDHIGGIPYLLRQV-NIPVYGGKLAIGLLRNKLEEHGLL 114 Query 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185 T L +IV+ + A+ F + THSIP S +V+ TP G +V+ D+KFD P Sbjct 115 RQTK-LNIIGEDDIVKFRKT-AVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFT-P 171 Query 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG-LI 244 GE + ++ E+GKEGV L+++ST T SE + D F + DG +I Sbjct 172 VGEPANLTKMAEIGKEGVLCLLSDSTNSENPEFTMSERRVGESIHDIF----RKVDGRII 227 Query 245 ATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVS 304 TFAS+I RLQ++IE A + GR+ GRS+ I + LG I + + Sbjct 228 FATFASNIHRLQQVIEAAVQNGRKVAVFGRSMESAIEIGQTLGYINCPKNTFIEH----- 282 Query 305 KVLKEVSQARENYLLIV-TGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIP-NPL 360 E+++ N + I+ TG QGEP A L+R+ANG I P DTVVFS+ IP N + Sbjct 283 ---NEINRMPANKVTILCTGSQGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTI 339 Query 361 NVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRML 416 +V++ +L G +I ++H SGH +E+ + ++R++ P++ +P HGE+RM Sbjct 340 SVSRTI---NQLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQ 396 Query 417 THYAELAEEEGYMIGKEVFISRNGHVVEIPGS 448 + +LA + G + + FI NG V+ + G Sbjct 397 KMHVKLATDCG-IPEENCFIMDNGEVLALKGD 427 >RecName: Full=Ribonuclease J; Short=RNase J [Mycobacterium tuberculosis CDC1551] Sequence ID: P9WGZ8.1 Length: 558 >RecName: Full=Ribonuclease J; Short=RNase J; AltName: Full=Beta-lactamase; AltName: Full=Penicillinase [Mycobacterium tuberculosis H37Rv] Sequence ID: P9WGZ9.1 Length: 558 Range 1: 16 to 431 Score:190 bits(483), Expect:2e-53, Method:Compositional matrix adjust., Identities:135/447(30%), Positives:227/447(50%), Gaps:40/447(8%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 +++ LGG E+G+NMT E+ G ++I+D G+ H++ DL +P Sbjct 16 LRVTALGGINEIGRNMTVFEHLGRLLIIDCGVLFPG---HDE------PGVDL----ILP 62 Query 68 DDRPIRNK--KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 D R + ++ + A+ L+HGH DHIGA+ L PD+P+ G+ +T+ L + + EY Sbjct 63 DMRHVEDRLDDIEALVLTHGHEDHIGAIPFLLKLRPDIPVVGSKFTLALVAEKCR--EY- 119 Query 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185 +T E G+ + E+ + HS P + + ++T G +++ D KFD P Sbjct 120 RITPVFVEVREGQSTR-HGVFECEYFAVNHSTPDALAIAVYTGAGTILHTGDIKFDQLPP 178 Query 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG-LI 244 G D + LG GV +L+ +ST PSE+ L L G ADG +I Sbjct 179 DGRPTDLPGMSRLGDTGVDLLLCDSTNAEIPGVGPSESEVGPTLHR--LIRG--ADGRVI 234 Query 245 ATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVS 304 FAS++ R+Q++I+ A +GR+ F+GRS+ + +A+QLG +++ S ++ Sbjct 235 VACFASNVDRVQQIIDAAVALGRRVSFVGRSMVRNMRVARQLGFLRVADSDLI------- 287 Query 305 KVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDI--GPRDTVVFSAGVIPNPLNV 362 + + A + +LI TG QGEP + L+RM+ GE I D +V S+ +IP N Sbjct 288 DIAAAETMAPDQVVLITTGTQGEPMSALSRMSRGEHRSITLTAGDLIVLSSSLIPG--NE 345 Query 363 AQRYALETKLRMKGVRMIKN----LHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTH 418 + + L G R++ N +HVSGHA + +L + P ++P HG +RML Sbjct 346 EAVFGVIDALSKIGARVVTNAQARVHVSGHAYAGELLFLYNGVRPRNVMPVHGTWRMLRA 405 Query 419 YAELAEEEGYMIGKEVFISRNGHVVEI 445 A+LA G + + + ++ NG V++ Sbjct 406 NAKLAASTG-VPQESILLAENGVSVDL 431 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus aureus subsp. aureus USA300] Sequence ID: Q2FHG3.2 Length: 557 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus aureus subsp. aureus NCTC 8325] Sequence ID: Q2FZ19.2 Length: 557 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus aureus RF122] Sequence ID: Q2YXP1.2 Length: 557 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus aureus subsp. aureus COL] Sequence ID: Q5HGF6.2 Length: 557 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus aureus subsp. aureus MSSA476] Sequence ID: Q6G9T8.1 Length: 557 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus aureus subsp. aureus MW2] Sequence ID: Q7A115.1 Length: 557 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus aureus subsp. aureus N315] Sequence ID: Q7A5X6.1 Length: 557 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus aureus subsp. aureus Mu50] Sequence ID: Q99UJ7.1 Length: 557 Range 1: 11 to 428 Score:186 bits(472), Expect:8e-52, Method:Compositional matrix adjust., Identities:148/456(32%), Positives:230/456(50%), Gaps:54/456(11%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 I+I LGG E+ KNM VE + E+ ++D G+ + ED +M D+ IP Sbjct 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGL-----MFPED----EMLGIDI----VIP 57 Query 68 D-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 D + NK K+ I L+HGH IGAV + D P+YG+ TI L K +K Sbjct 58 DISYVLENKDKLKGIFLTHGHEHAIGAVSYVLEQL-DAPVYGSKLTIALIKENMKARN-I 115 Query 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185 + Y N I++ +N+ I F THSIP S V IHT GA+VY ++KFD + Sbjct 116 DKKVRYYTVNNDSIMRF-KNVNISFFNTTHSIPDSLGVCIHTSYGAIVYTGEFKFDQSLH 174 Query 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEET-KTPSEAVAKMLLEDFFLYEGMEADGLI 244 PD KR+ E+G+EGV VLI++ST + TP + + + F G LI Sbjct 175 GHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGR----LI 230 Query 245 ATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVS 304 + +AS+ R+Q+++ IA+K+ R+ F+GRSL IA+++G + P + Sbjct 231 VSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDI--------PKDLL 282 Query 305 KVLKEVSQARENYLLIV-TGHQGEPGAILTRMAN--GELYDIGPRDTVVFSAG------- 354 + EV +N ++I+ TG QGEP L++MA ++ +I D+V + Sbjct 283 IPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEV 342 Query 355 VIPNPLNVAQRYALETKLRMKGVRMIKN---LHVSGHASKEDHRYLIRMLNPEYIVPAHG 411 +I N LN +L G +I N +H S H E+ + +I ++ PEY +P G Sbjct 343 IIANTLN---------ELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQG 393 Query 412 EFRMLTHYAELAEEEGYMIGKEVFISRNGHVVEIPG 447 EF+M +A+LA E G + +++F+ G V+ G Sbjct 394 EFKMQIAHAKLAAEAG-VAPEKIFLVEKGDVINYNG 428 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus aureus subsp. aureus MRSA252] Sequence ID: Q6GHG0.1 Length: 557 Range 1: 11 to 428 Score:186 bits(472), Expect:8e-52, Method:Compositional matrix adjust., Identities:148/456(32%), Positives:230/456(50%), Gaps:54/456(11%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 I+I LGG E+ KNM VE + E+ ++D G+ + ED +M D+ IP Sbjct 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGL-----MFPED----EMLGIDI----VIP 57 Query 68 D-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 D + NK K+ I L+HGH IGAV + D P+YG+ TI L K +K Sbjct 58 DISYVLENKEKLKGIFLTHGHEHAIGAVSYVLEQL-DAPVYGSKLTIALIKENMKARN-I 115 Query 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185 + Y N I++ +N+ I F THSIP S V IHT GA+VY ++KFD + Sbjct 116 DKKVRYYTVNNDSIMRF-KNVNISFFNTTHSIPDSLGVCIHTSYGAIVYTGEFKFDQSLH 174 Query 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEET-KTPSEAVAKMLLEDFFLYEGMEADGLI 244 PD KR+ E+G+EGV VLI++ST + TP + + + F G LI Sbjct 175 GHYAPDIKRMAEIGEEGVFVLISDSTEAEKPGYNTPENVIEHHMYDAFAKVRGR----LI 230 Query 245 ATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVS 304 + +AS+ R+Q+++ IA+K+ R+ F+GRSL IA+++G + P + Sbjct 231 VSCYASNFIRIQQVLNIASKLNRKVSFLGRSLESSFNIARKMGYFDI--------PKDLL 282 Query 305 KVLKEVSQARENYLLIV-TGHQGEPGAILTRMAN--GELYDIGPRDTVVFSAG------- 354 + EV +N ++I+ TG QGEP L++MA ++ +I D+V + Sbjct 283 IPITEVDNYPKNEVIIIATGMQGEPVEALSQMAQHKHKIMNIEEGDSVFLAITASANMEV 342 Query 355 VIPNPLNVAQRYALETKLRMKGVRMIKN---LHVSGHASKEDHRYLIRMLNPEYIVPAHG 411 +I N LN +L G +I N +H S H E+ + +I ++ PEY +P G Sbjct 343 IIANTLN---------ELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQG 393 Query 412 EFRMLTHYAELAEEEGYMIGKEVFISRNGHVVEIPG 447 EF+M +A+LA E G + +++F+ G V+ G Sbjct 394 EFKMQIAHAKLAAEAG-VAPEKIFLVEKGDVINYNG 428 >RecName: Full=Ribonuclease J2; Short=RNase J2 [Bacillus subtilis subsp. subtilis str. 168] Sequence ID: O31760.3 Length: 555 Range 1: 9 to 426 Score:184 bits(468), Expect:3e-51, Method:Compositional matrix adjust., Identities:141/445(32%), Positives:228/445(51%), Gaps:32/445(7%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 ++I LGG E+GKN+ +E + ++ +VD G L+H + E M D+ IP Sbjct 9 VRIIALGGVGEIGKNLYVIEIDSDIFVVDAG------LMHPENE---MLGIDV----VIP 55 Query 68 DDRPI--RNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 D + R +V AI L+HGH ++IG V L VP+YGT T+ L + ++K + Sbjct 56 DISYLIERADRVKAIFLTHGHDENIGGVFYLLNKL-SVPVYGTKLTLALLREKLKQYGHN 114 Query 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185 T+ L E + ++ E+ + F + HSIP S V T G++V D+KFD Sbjct 115 RKTD-LREIHSKSVITF-ESTKVSFFRTIHSIPDSVGVSFKTSLGSIVCTGDFKFDQTPA 172 Query 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIA 245 + D + ++G GV L+++S TPSEA + D LY + +I Sbjct 173 LNQTCDIGEIAKIGNSGVLALLSDSANAERPGYTPSEAAVSGEISDA-LYNSQ--NRVII 229 Query 246 TTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVSK 305 FAS+I R+Q++I A + GR+ G++L +A++LG I+ + + Sbjct 230 AVFASNINRIQQVIHAAAQNGRKIAVAGKNLQSVLQLARKLGYIEADDELFISVQDVKKY 289 Query 306 VLKEVSQARENYLLIVTGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIP-NPLNV 362 +EV+ +I G QGEP A LTRMAN + +I DTVV ++ IP L Sbjct 290 PKREVA-------IITAGSQGEPLAALTRMANKAHKQLNIEEGDTVVIASTPIPGQELIY 342 Query 363 AQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAEL 422 ++ L + + + K +HVSGH S+E+ + +I +L P+Y++P +GE+RM ++++ Sbjct 343 SKTVDLLARAGAQVIFAQKRVHVSGHGSQEELKLMINLLKPKYLIPVNGEYRMQKAHSKI 402 Query 423 AEEEGYMIGKEVFISRNGHVVEIPG 447 AEE G M ++F+ G VVE G Sbjct 403 AEETG-MKRSDIFLIEKGDVVEFRG 426 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292] Sequence ID: Q49X63.1 Length: 557 Range 1: 11 to 428 Score:183 bits(465), Expect:8e-51, Method:Compositional matrix adjust., Identities:145/453(32%), Positives:227/453(50%), Gaps:48/453(10%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 I+I LGG E+ KNM VE + E+ ++D G+ + ED +M D+ IP Sbjct 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGL-----MFPED----EMLGVDI----VIP 57 Query 68 DDR-PIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 D + I NK K+ I L+HGH IGAV + D P+YG+ TI L K +K Sbjct 58 DIQYVIENKEKLKGIFLTHGHEHAIGAVTYVLEQV-DAPVYGSKLTIALIKENMKARNVN 116 Query 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185 + Y T E V + + + F THSIP S + IHT GA+VY ++KFD + Sbjct 117 KKVR--YYTVNNESVMRFKGVNVTFFNTTHSIPDSLGICIHTSYGAIVYTGEFKFDQSLH 174 Query 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEET-KTPSEAVAKMLLEDFFLYEGMEADGLI 244 PD K++ E+G+ GV LI++ST + TP + + + F +G LI Sbjct 175 GHYAPDLKKMTEIGEAGVFALISDSTEAEKPGYNTPENVIESHMYDAFTKVKGR----LI 230 Query 245 ATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVS 304 + +AS+ R+Q+++ +A ++ R+ F+GRSL IA+++G + S+ L P Sbjct 231 VSCYASNFIRIQQVLNLAQRLNRKVSFLGRSLESSFNIARKMGYFDI--SKDLLIP---- 284 Query 305 KVLKEVSQARENYLLIV-TGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAG------- 354 + EV +N ++I+ TG QGEP L++MA ++ +I P D+V + Sbjct 285 --INEVENYPKNEVIIIATGMQGEPVEALSQMAQKKHKIMNIEPGDSVFLTITASANMEV 342 Query 355 VIPNPLNVAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFR 414 ++ N LN R E + K +H S H E+ + +I ++ PEY +P +GEF+ Sbjct 343 IVGNTLNELVRAGAEI------IPNSKKIHASSHGCMEELKMMINIMKPEYFIPVNGEFK 396 Query 415 MLTHYAELAEEEGYMIGKEVFISRNGHVVEIPG 447 M +A+LA E G K +F+ G VV G Sbjct 397 MQISHAKLANEAGVQPEK-IFLVEKGDVVNYDG 428 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus epidermidis RP62A] Sequence ID: Q5HPR6.2 Length: 557 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus epidermidis ATCC 12228] Sequence ID: Q8CST0.2 Length: 557 Range 1: 11 to 428 Score:181 bits(460), Expect:4e-50, Method:Compositional matrix adjust., Identities:142/449(32%), Positives:230/449(51%), Gaps:40/449(8%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 I+I LGG E+ KNM VE + E+ ++D G+ + ED +M D+ IP Sbjct 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGL-----MFPED----EMLGVDI----VIP 57 Query 68 DDR-PIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 D + I NK ++ I L+HGH IGAV + D P+YG+ TI L K +K Sbjct 58 DIQYVIENKERLKGIFLTHGHEHAIGAVSYVLEQI-DAPVYGSKLTIALVKEAMKARNIK 116 Query 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185 + Y N+ I++ +N+ + F THSIP S V IHT G++VY ++KFD + Sbjct 117 KKVR-YYTVNHDSIMRF-KNVNVSFFNTTHSIPDSLGVCIHTSYGSIVYTGEFKFDQSLH 174 Query 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEET-KTPSEAVAKMLLEDFFLYEGMEADGLI 244 PD KR+ E+G EGV LI++ST + TP + + + F +G LI Sbjct 175 GHYAPDLKRMAEIGDEGVFALISDSTEAEKPGYNTPENIIEHHMYDAFAKVKGR----LI 230 Query 245 ATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVS 304 + +AS+ R+Q+++ IA+++ R+ F+GRSL IA+++G + P + Sbjct 231 VSCYASNFVRIQQVLNIASQLNRKVSFLGRSLESSFNIARKMGYFDI--------PKDLL 282 Query 305 KVLKEVSQARENYLLIV-TGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIPNPLN 361 + EV +N ++I+ TG QGEP L++MA ++ +I D++ + N + Sbjct 283 IPINEVENYPKNEVIIIATGMQGEPVEALSQMARKKHKIMNIEEGDSIFLAITASAN-ME 341 Query 362 VAQRYALETKLRMKGVRMIKN---LHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTH 418 V L +R G +I N +H S H E+ + ++ ++ PEY VP GEF+M Sbjct 342 VIIADTLNELVR-AGAHIIPNNKKIHASSHGCMEELKMMLNIMKPEYFVPVQGEFKMQIA 400 Query 419 YAELAEEEGYMIGKEVFISRNGHVVEIPG 447 +A+LA E G + +++F+ G V+ G Sbjct 401 HAKLAAETG-VAPEKIFLVEKGDVISYNG 428 >RecName: Full=Ribonuclease J; Short=RNase J [Mycolicibacterium smegmatis MC2 155] Sequence ID: A0QVT2.1 Length: 558 Range 1: 17 to 431 Score:181 bits(460), Expect:4e-50, Method:Compositional matrix adjust., Identities:138/452(31%), Positives:223/452(49%), Gaps:52/452(11%) Query 9 KIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIPD 68 ++ LGG E+G+NMT E+ G ++IVD G+ H++ DL +PD Sbjct 17 RVTALGGISEIGRNMTVFEHLGRLLIVDCGVLFPG---HDE------PGVDL----ILPD 63 Query 69 DRPIRNK--KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYFE 126 R I ++ ++ A+ ++H H DHIGA+ L PD+P+ G+ +TI L + + + Sbjct 64 LRHIEDRLDEIEALVVTHAHEDHIGAIPFLLKLRPDIPVVGSKFTIALVREKCREHRL-- 121 Query 127 VTNPLYETNYGEIVQVSEN-------LAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYK 179 P + V+V+E E+ + HSIP V IHT G V++ D K Sbjct 122 --KPKF-------VEVAERQSSQHGVFECEYFAVNHSIPGCLAVAIHTGAGTVLHTGDIK 172 Query 180 FDNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGME 239 D G D + LG GV + + +ST +PSE+ L L G E Sbjct 173 LDQLPLDGRPTDLPGMSRLGDAGVDLFLCDSTNSEHPGVSPSESEVGPTLHR--LIRGAE 230 Query 240 ADGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRS 299 +I FAS++ R+Q++I+ A +GR+ F+GRS+ + GIA++LG +K+ S +L Sbjct 231 GR-VIVACFASNVDRVQQIIDAAVALGRRVSFVGRSMVRNMGIARELGYLKVDDSDILDI 289 Query 300 PNAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDI--GPRDTVVFSAGVIP 357 A ++++ + +LI TG QGEP A L+RM+ GE I D ++ S+ +IP Sbjct 290 --AAAEMMPP-----DRVVLITTGTQGEPMAALSRMSRGEHRSITLTSGDLIILSSSLIP 342 Query 358 NPLNVAQRYALETKLRMKGVRMIKN----LHVSGHASKEDHRYLIRMLNPEYIVPAHGEF 413 N Y + L G R++ N +HVSGHA + +L + P ++P HG + Sbjct 343 G--NEEAVYGVIDSLSKIGARVVTNAQARVHVSGHAYAGELLFLYNGVRPRNVMPVHGTW 400 Query 414 RMLTHYAELAEEEGYMIGKEVFISRNGHVVEI 445 R L A LA G + + + ++ NG V++ Sbjct 401 RHLRANAALAASTG-VPPENIVLAENGVSVDL 431 >RecName: Full=Ribonuclease J 2; Short=RNase J2 [Staphylococcus haemolyticus JCSC1435] Sequence ID: Q4L5X8.1 Length: 557 Range 1: 11 to 428 Score:181 bits(459), Expect:5e-50, Method:Compositional matrix adjust., Identities:142/449(32%), Positives:230/449(51%), Gaps:40/449(8%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 I+I LGG E+ KNM VE + E+ ++D G+ + ED +M D+ IP Sbjct 11 IRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGL-----MFPED----EMLGVDI----VIP 57 Query 68 DDR-PIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 D + I NK K+ I LSHGH IGAV + D P+YG+ T+ L K +K Sbjct 58 DIQYVIENKEKLKGIFLSHGHEHAIGAVSYILEQI-DAPVYGSKLTLALVKENMKSRNVK 116 Query 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185 + Y N+ +++ +N+ I F THSIP S + IHT G++VY ++KFD + Sbjct 117 KKVR-YYTVNHDSVMRF-KNVNITFFNTTHSIPDSLGICIHTSYGSIVYTGEFKFDQSLQ 174 Query 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEET-KTPSEAVAKMLLEDFFLYEGMEADGLI 244 PD KR+ E+G+EGV LI++ST + TP + + + F +G LI Sbjct 175 GHYTPDIKRMAEIGEEGVFALISDSTEAEKPGYNTPENVIESHIYDAFAKVKGR----LI 230 Query 245 ATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVS 304 + +AS+ R+Q+++ A+K+ R+ F+GRSL IA+++G + P + Sbjct 231 VSCYASNFIRIQQVLNTASKLNRKVSFLGRSLESSFNIARKMGYFDI--------PKDLL 282 Query 305 KVLKEVSQARENYLLIV-TGHQGEPGAILTRMANGE--LYDIGPRDTVVFSAGVIPNPLN 361 + EV +N ++I+ TG +GEP L++MA + + +I D+V + N + Sbjct 283 IPINEVGNYPKNEVVIIATGMEGEPIEALSQMAQQKHRIMNIEEGDSVYLAITASAN-ME 341 Query 362 VAQRYALETKLRMKGVRMIKN---LHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTH 418 V L +R G +I N +H S H E+ + +I ++ PEY +P GEF+M Sbjct 342 VIIADTLNELVR-AGAYIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIA 400 Query 419 YAELAEEEGYMIGKEVFISRNGHVVEIPG 447 +A+LA E G + +++F+ G V+ G Sbjct 401 HAKLANESG-VAPEKIFLVEKGDVIHYDG 428 >RecName: Full=Ribonuclease J; Short=RNase J [Helicobacter pylori 26695] Sequence ID: P56185.1 Length: 689 Range 1: 141 to 558 Score:181 bits(460), Expect:3e-49, Method:Compositional matrix adjust., Identities:140/451(31%), Positives:223/451(49%), Gaps:46/451(10%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 +KI LGG E+G NM +E +++D G+ + E + + D L I Sbjct 141 VKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPK----EGLFGVDILIPDFSYLHQIK 196 Query 68 DDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEI------KG 121 D K+ I ++H H DHIGA L P+YGTP ++ L S+ K Sbjct 197 D-------KIAGIIITHAHEDHIGATPYLFKEL-QFPLYGTPLSLGLIGSKFDEHGLKKY 248 Query 122 EEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFD 181 YF++ + GE + IE++ ITHSI SS + I T G +++ D+K D Sbjct 249 RSYFKIVEKRCPISVGEFI-------IEWIHITHSIIDSSALAIQTKAGTIIHTGDFKID 301 Query 182 NNHPYGERP-DYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEA 240 + P P D RL G++GV +L+++ST + TPSE+ + F EA Sbjct 302 HT-PVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLF----KEA 356 Query 241 DG-LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRS 299 G +I +TF+S+I R+ + I+ K R+ IGRS+ K IA++LG I + + + Sbjct 357 QGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEA 416 Query 300 PNAVSKVLKEVSQARENYLLIVT-GHQGEPGAILTRMANGELYDIG--PRDTVVFSAGVI 356 EV++ +N +LIVT G QGE + L RMA E I P D V+ SA I Sbjct 417 --------NEVAKYPDNEILIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAI 468 Query 357 P-NPLNVAQRYALETKLRMK-GVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFR 414 P N +V+ K K + N+HVSGHA++E+ + ++R++ P++ +P HGE+ Sbjct 469 PGNEASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYN 528 Query 415 MLTHYAELAEEEGYMIGKEVFISRNGHVVEI 445 + + + A G + K +++ +G VE+ Sbjct 529 HVARHKQTAISCG-VPEKNIYLMEDGDQVEV 558 >RecName: Full=Ribonuclease J; Short=RNase J [Helicobacter pylori J99] Sequence ID: Q9ZJI6.1 Length: 692 Range 1: 144 to 561 Score:181 bits(460), Expect:3e-49, Method:Compositional matrix adjust., Identities:140/451(31%), Positives:223/451(49%), Gaps:46/451(10%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 +KI LGG E+G NM +E +++D G+ + E + + D L I Sbjct 144 VKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPK----EGLFGVDILIPDFSYLHQIK 199 Query 68 DDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEI------KG 121 D K+ I ++H H DHIGA L P+YGTP ++ L S+ K Sbjct 200 D-------KIAGIIITHAHEDHIGATPYLFKEL-QFPLYGTPLSLGLIGSKFDEHGLKKY 251 Query 122 EEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFD 181 YF++ + GE + IE++ ITHSI SS + I T G +++ D+K D Sbjct 252 RSYFKIVEKRCPISVGEFI-------IEWIHITHSIIDSSALAIQTKAGTIIHTGDFKID 304 Query 182 NNHPYGERP-DYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEA 240 + P P D RL G++GV +L+++ST + TPSE+ + F EA Sbjct 305 HT-PVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLF----KEA 359 Query 241 DG-LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRS 299 G +I +TF+S+I R+ + I+ K R+ IGRS+ K IA++LG I + + + Sbjct 360 QGRVIMSTFSSNIHRVHQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEA 419 Query 300 PNAVSKVLKEVSQARENYLLIVT-GHQGEPGAILTRMANGELYDIG--PRDTVVFSAGVI 356 EV++ +N +LIVT G QGE + L RMA E I P D V+ SA I Sbjct 420 --------NEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAI 471 Query 357 P-NPLNVAQRYALETKLRMK-GVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFR 414 P N +V+ K K + N+HVSGHA++E+ + ++R++ P++ +P HGE+ Sbjct 472 PGNEASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYN 531 Query 415 MLTHYAELAEEEGYMIGKEVFISRNGHVVEI 445 + + + A G + K +++ +G VE+ Sbjct 532 HVARHKQTAIACG-VPEKNIYLMEDGDQVEV 561 >RecName: Full=Ribonuclease J [Helicobacter pylori B128] Sequence ID: B9XZG7.1 Length: 691 Range 1: 143 to 560 Score:181 bits(458), Expect:5e-49, Method:Compositional matrix adjust., Identities:140/451(31%), Positives:223/451(49%), Gaps:46/451(10%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 +KI LGG E+G NM +E +++D G+ + E + + D L I Sbjct 143 VKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPK----EGLFGVDILIPDFSYLHQIK 198 Query 68 DDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEI------KG 121 D K+ I ++H H DHIGA L P+YGTP ++ L S+ K Sbjct 199 D-------KIAGIIITHAHEDHIGATPYLFKEL-QFPLYGTPLSLGLIGSKFDEHGLKKY 250 Query 122 EEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFD 181 YF++ + GE + IE++ ITHSI SS + I T G +++ D+K D Sbjct 251 RSYFKIVEKRCPISVGEFI-------IEWIHITHSIIDSSALAIQTKAGTIIHTGDFKID 303 Query 182 NNHPYGERP-DYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEA 240 + P P D RL G++GV +L+++ST + TPSE+ + F EA Sbjct 304 HT-PVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLF----KEA 358 Query 241 DG-LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRS 299 G +I +TF+S+I R+ + I+ K R+ IGRS+ K IA++LG I + + + Sbjct 359 QGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEA 418 Query 300 PNAVSKVLKEVSQARENYLLIVT-GHQGEPGAILTRMANGELYDIG--PRDTVVFSAGVI 356 EV++ +N +LIVT G QGE + L RMA E I P D V+ SA I Sbjct 419 --------NEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAI 470 Query 357 P-NPLNVAQRYALETKLRMK-GVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFR 414 P N +V+ K K + N+HVSGHA++E+ + ++R++ P++ +P HGE+ Sbjct 471 PGNEASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYN 530 Query 415 MLTHYAELAEEEGYMIGKEVFISRNGHVVEI 445 + + + A G + K +++ +G VE+ Sbjct 531 HVARHKQTAISCG-VPEKNIYLMEDGDQVEV 560 >RecName: Full=Ribonuclease J; Short=RNase J [Thermus thermophilus HB27] Sequence ID: Q72JJ7.1 Length: 573 Range 1: 26 to 430 Score:177 bits(448), Expect:2e-48, Method:Compositional matrix adjust., Identities:141/433(33%), Positives:218/433(50%), Gaps:42/433(9%) Query 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGA 65 + ++I LGG E+GKN+T + E+ ++D G+ + M DL Sbjct 26 DHVEIIPLGGMGEIGKNITVFRFRDEIFVLDGGLAFPE---------EGMPGVDL----L 72 Query 66 IPD-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHY----PDVPIYGTPYTIRLAKSEI 119 IP D I ++ K+ A L+HGH DHIG + L P VPIYG T+ L + ++ Sbjct 73 IPRVDYLIEHRHKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVPIYGARLTLGLLRGKL 132 Query 120 KGEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYK 179 + L E + + +QV ++ ++THSIP +S VVI TP G +V+ D+K Sbjct 133 EEFGLRPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFK 192 Query 180 FDNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEA-VAKMLLEDFFLYEGM 238 D G+ ++ + G EGV +LIA++T TPSE +AK L D + G Sbjct 193 LDPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERPGYTPSEMEIAKEL--DRVI--GR 248 Query 239 EADGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLR 298 + TTFASHI R+Q +I A K GR+ GRS+ K++ IA +LG +K+K R+ Sbjct 249 APGRVFVTTFASHIHRIQSVIWAAEKYGRKVAMEGRSMLKFSRIALELGYLKVK-DRLY- 306 Query 299 SPNAVSKVLKEVSQARENYLLIV-TGHQGEPGAILTRMA--NGELYDIGPRDTVVFSAGV 355 L+EV ++ +LI+ TG QG+P ++L R+A I P DTV+ S+ Sbjct 307 -------TLEEVKDLPDHQVLILATGSQGQPMSVLHRLAFEGHAKMAIKPGDTVILSSSP 359 Query 356 IPNPLNVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHG 411 IP R +L G ++ +H SGHAS+E+ + ++ + P + +P HG Sbjct 360 IPGNEEAVNRVI--NRLYALGAYVLYPPTYKVHASGHASQEELKLILNLTTPRFFLPWHG 417 Query 412 EFRMLTHYAELAE 424 E R ++ LAE Sbjct 418 EVRHQMNFKWLAE 430 >RecName: Full=Ribonuclease J 2; Short=RNase J 2 [Streptococcus pyogenes MGAS315] Sequence ID: Q8K7S6.1 Length: 553 Range 1: 4 to 404 Score:171 bits(432), Expect:4e-46, Method:Compositional matrix adjust., Identities:135/427(32%), Positives:210/427(49%), Gaps:33/427(7%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 IK+ LGG E GKN VE N + I+D G++ + DL IP Sbjct 4 IKMIALGGVREYGKNFYLVEINDSMFILDAGLKYPE---------NEQLGVDL----VIP 50 Query 68 D-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 + D I NK KV I LSHGH D IGA+ L P++G+ TI LAK +K Sbjct 51 NLDYVIENKGKVQGIFLSHGHADAIGALPYLLAEVS-APVFGSELTIELAKLFVKSNNST 109 Query 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185 + N + + ++ + L + F + THSIP+S +VI T +G +VY D+KFD Sbjct 110 KKFNNFHVVDSDTEIEFKDGL-VSFFRTTHSIPESMGIVIGTDKGNIVYTGDFKFDQAAR 168 Query 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG-LI 244 G + D RL E+GKEGV L+++S + SE+ ++ +ADG +I Sbjct 169 EGYQTDLLRLAEIGKEGVLALLSDSVNATSNDQIASESEVGEEMDSVI----SDADGRVI 224 Query 245 ATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVS 304 AS++ R+Q++ + A GR+ + G A +L + + R+L P Sbjct 225 VAAVASNLVRIQQVFDSATAHGRRVVLTGTDAENIVRTALRLEKLMITDERLLIKP---- 280 Query 305 KVLKEVSQARENYLLIV-TGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPLNVA 363 K++S+ ++ L+I+ G GEP L +MA G + ++ + P+ A Sbjct 281 ---KDMSKFEDHELIILEAGRMGEPINSLQKMAAGRHRYVQIKEGDLVYIVTTPSTAKEA 337 Query 364 QRYALETKLRMKG--VRMI-KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYA 420 +E + G V++I +NL VSGHA+ D + L+ +L P+Y+ P GE+R L +A Sbjct 338 MVARVENLIYKAGGSVKLITQNLRVSGHANGRDLQLLMNLLKPQYLFPVQGEYRDLAAHA 397 Query 421 ELAEEEG 427 +LAEE G Sbjct 398 KLAEEVG 404 >RecName: Full=Ribonuclease J; Short=RNase J [Corynebacterium glutamicum ATCC 13032] Sequence ID: P54122.2 Length: 718 Range 1: 153 to 570 Score:166 bits(421), Expect:8e-44, Method:Compositional matrix adjust., Identities:142/452(31%), Positives:215/452(47%), Gaps:46/452(10%) Query 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGA 65 N ++IY LGG E+G+NMT EYN ++IVD G VL E DL Sbjct 153 NGLRIYALGGISEIGRNMTVFEYNNRLLIVDCG-----VLFPSSGE----PGVDL----I 199 Query 66 IPDDRPIRN--KKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEE 123 +PD PI + +V A+ ++HGH DHIGA+ L D+PI + +T+ L ++ K E Sbjct 200 LPDFGPIEDHLHRVDALVVTHGHEDHIGAIPWLLKLRNDIPILASRFTLALIAAKCK--E 257 Query 124 YFEVTNPLYETNYGEIVQVSEN---LAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKF 180 + + L E N Q +E+ I F + HSIP + I TP G V++ D K Sbjct 258 HRQRPK-LIEVNE----QSNEDRGPFNIRFWAVNHSIPDCLGLAIKTPAGLVIHTGDIKL 312 Query 181 DNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEA 240 D P G D L G EGV +++ +ST + SEA L+ G Sbjct 313 DQTPPDGRPTDLPALSRFGDEGVDLMLCDSTNATTPGVSGSEADVAPTLKRLV---GDAK 369 Query 241 DGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSP 300 +I +FAS++ R+Q ++ A R+ F GRS+ + IA++LG +K +P Sbjct 370 QRVILASFASNVYRVQAAVDAAVASNRKVAFNGRSMIRNMEIAEKLGYLK--------AP 421 Query 301 NAVSKVLKEVSQ-ARENYLLIVTGHQGEPGAILTRMANGELYDIGPR--DTVVFSAGVIP 357 + + S+ A +LI TG QGEP A L+RMA E I R D ++ S+ ++P Sbjct 422 RGTIISMDDASRMAPHKVMLITTGTQGEPMAALSRMARREHRQITVRDGDLIILSSSLVP 481 Query 358 NPLNVAQRYALETKLRMKGVRMIK----NLHVSGHASKEDHRYLIRMLNPEYIVPAHGEF 413 N + + L G ++ +H SGH + +L P+ +P HGE+ Sbjct 482 G--NEEAVFGVINMLAQIGATVVTGRDAKVHTSGHGYSGELLFLYNAARPKNAMPVHGEW 539 Query 414 RMLTHYAELAEEEGYMIGKEVFISRNGHVVEI 445 R L ELA G + V +++NG VV++ Sbjct 540 RHLRANKELAISTG-VNRDNVVLAQNGVVVDM 570 >RecName: Full=Ribonuclease J; Short=RNase J [Mycoplasmoides genitalium G37] Sequence ID: P47385.1 Length: 569 Range 1: 17 to 431 Score:163 bits(412), Expect:2e-43, Method:Compositional matrix adjust., Identities:141/453(31%), Positives:230/453(50%), Gaps:56/453(12%) Query 9 KIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKL-GAIP 67 KIY GG +EVGKNM +EY+ E++I+D GI K +S DL + G IP Sbjct 17 KIYAFGGIQEVGKNMYGIEYDDEIIIIDCGI--------------KFASDDLLGINGIIP 62 Query 68 D-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 + I N+ KV A+ ++HGH DHIG V L D+P+ P R+A S I Sbjct 63 SFEHLIENQSKVKALFITHGHEDHIGGVPYLLKQV-DIPVIYAP---RIAASLI-----L 113 Query 126 EVTNPLYETNYGEIVQV-------SENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDY 178 + N + +IV +++ I+F ++ HSIP + + + TP G +V + DY Sbjct 114 KKVNEHKDAKLNKIVTFDDFSEFQTKHFKIDFYRVNHSIPDAFGICVQTPNGNIVQSGDY 173 Query 179 KFDNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGM 238 +FD E D ++ ++ + V V ++EST + SE + ++ Sbjct 174 RFDF-AAGSEMLDVHKVVKIAERNVHVFMSESTNAEVPGFSQSEKLIYRNIQKIL----K 228 Query 239 EADG-LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVL 297 EA G +I TTFAS+I R+ E+IEIA R+ +G+S+ I++++GL+ + Sbjct 229 EARGRVILTTFASNITRINEIIEIALNNKRKICLLGKSMDVNVNISRKIGLMAIDS---- 284 Query 298 RSPNAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGE--LYDIGPRDTVVFSAGV 355 N + +V + N L++ TG QGE A L MA G+ + DT++ S+ Sbjct 285 ---NDIVEVRDIKNYPDRNILILCTGSQGEEAAALNTMARGKHNWVSLKSTDTIIMSSNP 341 Query 356 IPNPLNVAQRYALETKLRMKGVRMIKN-----LHVSGHASKEDHRYLIRMLNPEYIVPAH 410 IP N A L +L GV + +N LH SGHA++++ + ++ ++ P+Y++P H Sbjct 342 IPG--NYAAVENLLNELSKFGVAIYENSSQLKLHASGHATQQELQLMLNLMFPKYLIPIH 399 Query 411 GEFRMLTHYAELAEEEGYMIGKEVFISRNGHVV 443 GEF+M+ +A E G + ++V + NG V+ Sbjct 400 GEFKMMRTIKNIANECG-IKSEDVALLSNGQVM 431 >RecName: Full=Ribonuclease J; Short=RNase J [Sinorhizobium meliloti 2011] Sequence ID: M4MR97.1 Length: 564 Range 1: 21 to 439 Score:159 bits(403), Expect:5e-42, Method:Compositional matrix adjust., Identities:129/459(28%), Positives:223/459(48%), Gaps:61/459(13%) Query 13 LGGYEEVGKNMTAVEY----NGEVVIVDMGIRLDRV------LIHEDVEFQKMSSKDLRK 62 LGG E+G N+ Y + + ++VD G+ L+ D+ F ++L+ Sbjct 21 LGGVGEIGMNLGLYGYGRPGHRQWIMVDCGVTFPGPELPGVDLVLPDIAFLAEQRRNLK- 79 Query 63 LGAIPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGE 122 AI ++H H DH GA+ L P +VP+Y +P+T + ++ + Sbjct 80 ----------------AIIITHAHEDHYGALNDLWPGL-NVPVYASPFTAGM----LEAK 118 Query 123 EYFEVTN---PLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYK 179 FE + P+ G+ + V ++E V + HSIP+ +VI T G VV+ D+K Sbjct 119 RAFEKSRSEIPITIFKQGDRINVGP-FSVEAVGVNHSIPEPMALVIRTQLGTVVHTGDWK 177 Query 180 FDNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGME 239 D G D R +++G+EGV L+ +ST E +PSE L + Sbjct 178 IDLEPSLGPLTDESRFRQIGEEGVLALVCDSTNALREGVSPSERQVSESLAKII----AD 233 Query 240 ADGLIA-TTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLR 298 A+G + TTF+S++ R++ + E A GR+ + +G S+ + +A+ +GL M+G + Sbjct 234 AEGRVGITTFSSNVGRIRSVAEAAEAAGREVLLLGSSMKRVVDVARDVGL--MEGVKPFL 291 Query 299 SPNAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIG--PRDTVVFSAGVI 356 + + + R+ ++I+TG QGEP A L ++A E+ ++ DT+VFS+ I Sbjct 292 AEDEFGYI------PRDKVVVILTGSQGEPRAALAKIARDEMRNVAFSAGDTIVFSSRTI 345 Query 357 PNPLNVAQRYALETKLRMKGVRMIKN----LHVSGHASKEDHRYLIRMLNPEYIVPAHGE 412 P N ++ L +G+ +I + +HVSGH + + + + + + P+ +VP HGE Sbjct 346 PG--NEKAINDIKNGLIEQGIHIITDSEALVHVSGHPRRTELQQMYQWVKPQILVPVHGE 403 Query 413 FRMLTHYAELAEEEGYMIGKEVFISRNGHVVEI-PGSLE 450 LT +AEL + G V RNG ++ + PG E Sbjct 404 AAHLTAHAELGLQSGI---PSVPRLRNGEMLRLAPGPAE 439 >RecName: Full=Ribonuclease J; Short=RNase J [Mycoplasmoides pneumoniae M129] Sequence ID: P75497.1 Length: 569 Range 1: 17 to 431 Score:158 bits(399), Expect:2e-41, Method:Compositional matrix adjust., Identities:139/453(31%), Positives:229/453(50%), Gaps:56/453(12%) Query 9 KIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKL-GAIP 67 KI+ GG +EVGKNM +EY+ E++I+D GI K +S DL + G IP Sbjct 17 KIFAFGGIQEVGKNMYGIEYDDEIIIIDCGI--------------KFASDDLLGIDGIIP 62 Query 68 D-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125 + I N+ KV A+ ++HGH DHIG V L DVP+ P R+A S I Sbjct 63 SFEYLIENQAKVKALFITHGHEDHIGGVPYLLKQV-DVPVIYAP---RIAASLI-----L 113 Query 126 EVTNPLYETNYGEIVQV-------SENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDY 178 + N + ++V +++ I+F ++ HSIP + V + TP G +V + D+ Sbjct 114 KKVNEHKDAKLNKVVVYDDFSNFETKHFKIDFYRVNHSIPDAFGVCVQTPNGNIVESGDF 173 Query 179 KFDNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGM 238 +FD GE D ++ ++ + V V + E+T + SE + + Sbjct 174 RFDF-AAGGEMLDVHKVVKIAERNVHVFMCETTNAEIPGFSQSEKLIYRNINKII----K 228 Query 239 EADG-LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVL 297 EA G +I TTFAS+I R+ E+IEIA R+ +G+S+ I++++GL+ + Sbjct 229 EARGRVILTTFASNITRINEIIEIAVNNKRKVCLLGKSMDVNVNISRKIGLMDI------ 282 Query 298 RSPNAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGE--LYDIGPRDTVVFSAGV 355 N + +V + + L++ TG QGE A L MA G+ + DT++ S+ Sbjct 283 -DSNDIVEVRDIKNYPDRSILILCTGSQGEDSAALNTMARGKHNWVSLKSTDTIIMSSN- 340 Query 356 IPNPLNVAQRYALETKLRMKGVRMIKN-----LHVSGHASKEDHRYLIRMLNPEYIVPAH 410 P P N A L +L GV + +N LH SGHA++++ + ++ ++ P Y++P H Sbjct 341 -PIPGNYAAVENLLNELSKYGVTIFENSPNMKLHASGHATQQELQLMLNLVFPRYLIPIH 399 Query 411 GEFRMLTHYAELAEEEGYMIGKEVFISRNGHVV 443 GE++M+ +A+E G + G +V + NG V+ Sbjct 400 GEYKMMRTIKNIAQECG-INGDDVGLLANGQVM 431 >RecName: Full=Ribonuclease J; Short=RNase J; AltName: Full=Protein EMBRYO DEFECTIVE 2746; Flags: Precursor [Arabidopsis thaliana] Sequence ID: Q84W56.1 Length: 911 Range 1: 110 to 524 Score:153 bits(386), Expect:8e-39, Method:Compositional matrix adjust., Identities:123/446(28%), Positives:220/446(49%), Gaps:41/446(9%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 ++I +GG E+G N V +++D GI +++ QK+ +P Sbjct 110 LRILPIGGLGEIGMNCMLVGNYDRYILIDAGIMFPD---YDEPGIQKI----------MP 156 Query 68 DDRPIR--NKKVVAIALSHGHLDHIGAVGKLAPHY-PDVPIYGTPYTIRLAKSEIKGEEY 124 D IR K+ A+ ++HGH DHIGA+ + P P+ PI+ + +T+ L K +K Sbjct 157 DTGFIRRWKHKIEAVVITHGHEDHIGALPWVIPALDPNTPIFASSFTMELIKKRLKEHGI 216 Query 125 FEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNH 184 F +T ++ IE + +THSIP S + + +G +++ D+K D Sbjct 217 F--VQSRLKTFSTRRRFMAGPFEIEPITVTHSIPDCSGLFLRCADGNILHTGDWKIDEAP 274 Query 185 PYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG-L 243 G+ D + L+EL KEGV +++++ST V +P +++ ++ D + M A G + Sbjct 275 LDGKVFDREALEELSKEGVTLMMSDSTNVL----SPGRTISEKVVADALVRNVMAAKGRV 330 Query 244 IATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAV 303 I T FAS+I RL + A+ GR+ +F+G SL Y A + G + P+++ Sbjct 331 ITTQFASNIHRLGSIKAAADITGRKLVFVGMSLRTYLEAAWRDGKAPI-------DPSSL 383 Query 304 SKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGE--LYDIGPRDTVVFSAGVIPNPLN 361 KV + A ++ L++ TG Q EP A L + G + + D +++SA VIP N Sbjct 384 IKVEDIEAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIILYSAKVIPG--N 441 Query 362 VAQRYALETKLRMKGVRMI--KN--LHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLT 417 ++ + ++ G +I KN LH SGHA + + +++++ P++ +P HGE L Sbjct 442 ESRVMKMMNRIADIGPNIIMGKNEMLHTSGHAYRGELEEVLKIVKPQHFLPIHGELLFLK 501 Query 418 HYAELAEEEGYMIGKEVFISRNGHVV 443 + L + G + + +NG ++ Sbjct 502 EHELLGKSTGI---RHTTVIKNGEML 524 >RecName: Full=Uncharacterized protein MJ0047 [Methanocaldococcus jannaschii DSM 2661] Sequence ID: Q60355.2 Length: 428 Range 1: 7 to 415 Score:50.8 bits(120), Expect:1e-05, Method:Compositional matrix adjust., Identities:104/458(23%), Positives:184/458(40%), Gaps:92/458(20%) Query 14 GGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIPDDRPIR 73 G EVG++ ++ + +++D G++L + ++E+ + D IR Sbjct 7 GAALEVGRSCIEIKTDKSKILLDCGVKLGK-----EIEYPIL-------------DNSIR 48 Query 74 NKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKG------------ 121 + V + +SH HLDH GA+ L DVP+ T + +L K +K Sbjct 49 D--VDKVFISHAHLDHSGALPVLFHRKMDVPVITTELSKKLIKVLLKDMVKIAETENKKI 106 Query 122 -------EEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVY 174 +E T PL NY + + ++ + E H +SI++ + ++Y Sbjct 107 PYNNHDVKEAIRHTIPL---NYND-KKYYKDFSYELFSAGHIPGSASILLNYQNNKTILY 162 Query 175 ACDYKF-DNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDF- 232 D K D G Y K+ + +LI EST +AV +E Sbjct 163 TGDVKLRDTRLTKGADLSYT------KDDIDILIIEST-YGNSIHPDRKAVELSFIEKIK 215 Query 233 -FLYEGMEADGLIATTFASHIARLQELIEIANKMGRQA-IFIGRSLAKYTGIAKQLGLIK 290 L+ G A + FA + R QE++ I N A I++ G+A ++ + Sbjct 216 EILFRGGVA---LIPVFA--VDRAQEILLILNDYNIDAPIYLD-------GMAVEVTKLM 263 Query 291 MKGSRVLRSPNAVSKVLKEVS---------QARENY-----LLIVTGHQGEPGAILTRMA 336 + +L + + K LK V +A EN +++ T + G IL + Sbjct 264 LNYKHMLNESSQLEKALKNVKIIEKSEDRIKAIENLSKNGGIVVTTAGMLDGGPILYYL- 322 Query 337 NGELYDIGPRDTVVFSAGVIPNPLNVAQRYALETKLRMKGVRMIK-NLHV-----SGHAS 390 +L+ P++ ++ + + + R+ +ET G IK NL V S HA Sbjct 323 --KLFMHNPKNALLLTGYQVRDS---NGRHLIETGKIFIGKDEIKPNLEVCMYNFSCHAG 377 Query 391 KEDHRYLIRMLNPEYIVPAHGEFRMLTHYAELAEEEGY 428 ++ +I+ +NPE ++ HGE T A E G+ Sbjct 378 MDELHEIIKKVNPELLIIQHGEEVQATILRNWALEHGF 415 >RecName: Full=Uncharacterized protein aq_2135 [Aquifex aeolicus VF5] Sequence ID: O67893.1 Length: 211 Range 1: 2 to 138 Score:48.1 bits(113), Expect:4e-05, Method:Compositional matrix adjust., Identities:47/178(26%), Positives:74/178(41%), Gaps:46/178(25%) Query 7 MIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAI 66 +IK+ +G V ++ A E +GE +I+D G +++L Sbjct 2 IIKVIPVGPIA-VNCSVVADEKSGEAIIIDPGAEAEKIL--------------------- 39 Query 67 PDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKG--EEY 124 +++ KVV I +HGH+DH+G VGKL + DVP Y P L EI Y Sbjct 40 ---EAVKDFKVVGIVATHGHIDHVGQVGKLKELF-DVPFYMNPLDKFLINDEIWSGFASY 95 Query 125 F---EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYK 179 P E + G++++V + +EF V+HTP C Y+ Sbjct 96 IGAVPCPEPDVEISEGDVIRVGD---VEF------------KVLHTPGHTPGLCCLYE 138 >RecName: Full=Integrator complex subunit 11; Short=Int11; AltName: Full=Cleavage and polyadenylation-specific factor 3-like protein; Short=CPSF3-like protein [Danio rerio] Sequence ID: Q503E1.1 Length: 598 Range 1: 4 to 446 Score:45.8 bits(107), Expect:6e-04, Method:Compositional matrix adjust., Identities:104/491(21%), Positives:195/491(39%), Gaps:101/491(20%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 IK+ LG ++VG++ V G+ +++D G+ + ++D F S + + G + Sbjct 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMG---FNDDRRFPDFSY--ITQNGRL- 57 Query 68 DDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYP-DVPIYGTPYT----------IRLAK 116 + + + +SH HLDH GA+ ++ D PIY T T R Sbjct 58 ------TEFLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKIT 111 Query 117 SEIKGEEYFEVTNPLYET-------NYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPE 169 + KGE F + + + N + VQV + L I+ H + +++V I Sbjct 112 VDKKGETNFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVL-GAAMVQIKVGS 170 Query 170 GAVVYACDYKFDNNHPYGE------RPDY--------------KRLKELGKEGVKVLIAE 209 +VVY DY + G RPD KR +E ++ +K + E Sbjct 171 ESVVYTGDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRE--RDFLKK-VHE 227 Query 210 STRVAEETKTPSEAVAK-----MLLEDFFLYEGMEADGLIATTF---ASHIARLQELIEI 261 + + P A+ + +LLE F+ ++A +T A+H +L I Sbjct 228 TVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKL--FITW 285 Query 262 ANKMGRQAIFIGRSLAKYTGI-------AKQLGLIKMKGSRVLRSPNAVSKVLKEVSQAR 314 N+ R+ F+ R++ ++ I A G + + + + ++ K+ + Sbjct 286 TNQKIRKT-FVQRNMFEFKHIKAFDRSYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNE 344 Query 315 ENYLLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPLNVAQRYALETKLRM 374 +N ++I+ G+ + G + ++ NG+ L + R L+ KL+ Sbjct 345 KN-MVIMPGYCVQ-GTVGHKILNGQ------------------KKLEMEGRATLDVKLQ- 383 Query 375 KGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAELAEEEGYMIGKEV 434 ++ + S HA + LIRM P ++ HGE + + + E+E Sbjct 384 -----VEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAKKMEFLKDKIEQE---FSISC 435 Query 435 FISRNGHVVEI 445 F+ NG I Sbjct 436 FMPANGETTTI 446 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Buchnera aphidicola str. Sg (Schizaphis graminum)] Sequence ID: Q08889.1 Length: 250 Range 1: 42 to 102 Score:43.5 bits(101), Expect:0.002, Method:Compositional matrix adjust., Identities:22/61(36%), Positives:34/61(55%), Gaps:14/61(22%) Query 73 RNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYT--------------IRLAKSE 118 +N K++AI L+H H+DH+G V ++ YP+V ++G T I+L KSE Sbjct 42 KNWKLIAILLTHNHIDHVGGVEEIIRRYPNVTVFGPEETKTRNVNKIVKQGDVIKLLKSE 101 Query 119 I 119 I Sbjct 102 I 102 >RecName: Full=Uncharacterized protein MJ0162 [Methanocaldococcus jannaschii DSM 2661] Sequence ID: Q57626.1 Length: 421 Range 1: 8 to 236 Score:43.5 bits(101), Expect:0.002, Method:Compositional matrix adjust., Identities:70/269(26%), Positives:110/269(40%), Gaps:53/269(19%) Query 14 GGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIPDDRPIR 73 GG +++G + VE V++D G+ D G IP + Sbjct 8 GGCQQIGMSCVEVETQKGRVLLDCGMSPDT--------------------GEIPK---VD 44 Query 74 NKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGT-PY----------TIRLAKSEIKGE 122 +K V A+ +SH HLDH GA+ P Y IY T P T+ L K+ K E Sbjct 45 DKAVDAVIVSHAHLDHCGAI----PFYKFKKIYCTHPTADLMFITWRDTLNLTKA-YKEE 99 Query 123 EYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDN 182 + + NY E Q++EN+ +F H + +SI + ++Y D + Sbjct 100 DIQHAMENIECLNYYEERQITENIKFKFYNAGHILGSASI-YLEVDGKKILYTGD--INE 156 Query 183 NHPYGERPDYKRLKELGKEGVKVLIAESTRVAE-ETKTPSEAVAKMLLEDFFLYEGMEAD 241 P + E + VLI EST + + K + + + L+E+ + E +E Sbjct 157 GVSRTLLPADTDIDE-----IDVLIIESTYGSPLDIKPARKTLERQLIEE--ISETIENG 209 Query 242 G-LIATTFASHIARLQELIEIANKMGRQA 269 G +I FA I R QE++ I N R Sbjct 210 GKVIIPVFA--IGRAQEILLIINNYIRSG 236 >RecName: Full=Ribonuclease TTHA0252 [Thermus thermophilus HB8] Sequence ID: Q5SLP1.1 Length: 431 Range 1: 1 to 162 Score:43.5 bits(101), Expect:0.003, Method:Compositional matrix adjust., Identities:48/183(26%), Positives:78/183(42%), Gaps:34/183(18%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQ-KMSSKDLRKLGAI 66 ++I G EV + + G V++D G+ FQ K +++ G Sbjct 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGM------------FQGKEEARNHAPFGFD 48 Query 67 PDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAK------SEIK 120 P K+V A+ L+H HLDH+G + KL P+Y T T+ L + ++ Sbjct 49 P-------KEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVM 101 Query 121 GEEYF------EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVY 174 E +F E L YGE +++ L++ F Q H +P S+ VV +VY Sbjct 102 DEPFFGPEDVEEALGHLRPLEYGEWLRLG-ALSLAFGQAGH-LPGSAFVVAQGEGRTLVY 159 Query 175 ACD 177 + D Sbjct 160 SGD 162 >RecName: Full=Cleavage and polyadenylation specificity factor 73 [Drosophila melanogaster] Sequence ID: Q9VE51.2 Length: 684 Range 1: 13 to 143 Score:43.5 bits(101), Expect:0.003, Method:Compositional matrix adjust., Identities:39/166(23%), Positives:74/166(44%), Gaps:36/166(21%) Query 3 EEINMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRK 62 EE ++++I LG +EVG++ +E+ G+ +++D GI L Sbjct 13 EESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIH-----------------PGLSG 55 Query 63 LGAIPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGE 122 + A+P I ++ + +SH HLDH GA+ P + L K+ KG Sbjct 56 MDALPYVDLIEADEIDLLFISHFHLDHCGAL----PWF-------------LMKTSFKGR 98 Query 123 EYF-EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHT 167 + T +Y + +++S N++ E + T + ++S+ I T Sbjct 99 CFMTHATKAIYRWMLSDYIKIS-NISTEQMLYTEADLEASMEKIET 143 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Yersinia pestis Pestoides F] Sequence ID: A4TL56.1 Length: 251 Range 1: 48 to 76 Score:42.4 bits(98), Expect:0.004, Method:Compositional matrix adjust., Identities:16/29(55%), Positives:21/29(72%), Gaps:0/29(0%) Query 79 AIALSHGHLDHIGAVGKLAPHYPDVPIYG 107 AI L+H H DH+G V L H+PD+P+YG Sbjct 48 AILLTHHHNDHVGGVADLRHHFPDIPVYG 76 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Yersinia pestis] Sequence ID: Q0WHW5.1 Length: 251 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Yersinia pestis Antiqua] Sequence ID: Q1CAJ7.1 Length: 251 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Yersinia pestis Nepal516] Sequence ID: Q1CFI4.1 Length: 251 Range 1: 48 to 76 Score:42.0 bits(97), Expect:0.005, Method:Compositional matrix adjust., Identities:16/29(55%), Positives:21/29(72%), Gaps:0/29(0%) Query 79 AIALSHGHLDHIGAVGKLAPHYPDVPIYG 107 AI L+H H DH+G V L H+PD+P+YG Sbjct 48 AILLTHHHNDHVGGVADLRHHFPDIPVYG 76 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Yersinia pseudotuberculosis IP 31758] Sequence ID: A7FFK5.1 Length: 251 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Yersinia pseudotuberculosis YPIII] Sequence ID: B1JR44.1 Length: 251 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Yersinia pseudotuberculosis PB1/+] Sequence ID: B2KAD1.1 Length: 251 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Yersinia pseudotuberculosis IP 32953] Sequence ID: Q667M5.1 Length: 251 Range 1: 48 to 76 Score:42.0 bits(97), Expect:0.005, Method:Compositional matrix adjust., Identities:16/29(55%), Positives:21/29(72%), Gaps:0/29(0%) Query 79 AIALSHGHLDHIGAVGKLAPHYPDVPIYG 107 AI L+H H DH+G V L H+PD+P+YG Sbjct 48 AILLTHHHNDHVGGVADLRHHFPDIPVYG 76 >RecName: Full=Uncharacterized protein MJ1236 [Methanocaldococcus jannaschii DSM 2661] Sequence ID: Q58633.1 Length: 634 Range 1: 179 to 356 Score:42.7 bits(99), Expect:0.006, Method:Compositional matrix adjust., Identities:50/198(25%), Positives:82/198(41%), Gaps:41/198(20%) Query 7 MIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRL---DRVLIHEDVEFQKMSSKDLRKL 63 I++ LGG EVG++ V+ V++D GI + D+ H D + S +DL Sbjct 179 WIRVSFLGGAREVGRSCLYVQTPDTRVLIDCGINVACEDKAFPHFDA--PEFSIEDLD-- 234 Query 64 GAIPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYT-----------I 112 A+ ++H HLDH G + L + D P+Y T T + Sbjct 235 ---------------AVIVTHAHLDHCGFIPGLFRYGYDGPVYCTRPTRDLMTLLQKDYL 279 Query 113 RLAKSEIKGEEYF--EVTNPLYET---NYGEIVQVSENLAIEFVQITHSIPQSSIVVIHT 167 +AK E K Y ++ + T +YG +S + + H + S+I +H Sbjct 280 EIAKKEGKEVPYTSKDIKTCVKHTIPIDYGVTTDISPTIKLTLHNAGHVL-GSAIAHLHI 338 Query 168 PEGA--VVYACDYKFDNN 183 EG + Y D KF+ + Sbjct 339 GEGLYNLAYTGDIKFETS 356 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Pectobacterium carotovorum subsp. carotovorum PC1] Sequence ID: C6DC67.1 Length: 251 Range 1: 48 to 91 Score:41.6 bits(96), Expect:0.006, Method:Compositional matrix adjust., Identities:17/44(39%), Positives:27/44(61%), Gaps:0/44(0%) Query 79 AIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGE 122 AI L+H H DH+G V +L HYP++P++G T + + + E Sbjct 48 AILLTHHHNDHVGGVHELLKHYPNLPVFGPKETAKCGATSLLEE 91 >RecName: Full=Integrator complex subunit 11 homolog [Dictyostelium discoideum] Sequence ID: Q54YL3.1 Length: 744 Range 1: 3 to 427 Score:42.4 bits(98), Expect:0.007, Method:Compositional matrix adjust., Identities:105/475(22%), Positives:171/475(36%), Gaps:120/475(25%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 IK+ LG ++VG++ V + ++ D G+ M D R+ P Sbjct 3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMH--------------MGMNDARRF---P 45 Query 68 DDRPIR-----NKKVVAIALSHGHLDHIGAVGKLAPHYP-----DVPIYGTPYT------ 111 D I K + + ++H HLDH GA+ P + D PIY T T Sbjct 46 DFSYISKNGQFTKVIDCVIITHFHLDHCGAL----PFFTEMCGYDGPIYMTLPTKAICPI 101 Query 112 ----IRLAKSEIKGEEYF-------EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQS 160 R E KGE F + + N + ++V E L+I+ H + + Sbjct 102 LLEDYRKITVEKKGETNFFTAQMIKDCMKKVIPVNLHQTIKVDEELSIKAYYAGH-VLGA 160 Query 161 SIVVIHTPEGAVVYACDYKFDNNHPYG-----------------------------ERPD 191 ++ + +VVY DY + G ER Sbjct 161 AMFYAKVGDESVVYTGDYNMTPDRHLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDF 220 Query 192 YKRLKELGKEGVKVLIAEST--RVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIATTFA 249 KR+ E ++G KVLI RV E +L++ + +E M G I F+ Sbjct 221 LKRIHECVEKGGKVLIPVFALGRVQELC---------ILIDSY--WEQMNL-GHIPIYFS 268 Query 250 SHIARLQEL-----IEIANKMGRQAIFIGRSLAKYTGIAK-QLGLIKMKGSRVLRS---- 299 + +A L I N+ +Q F+ R++ + I Q L+ G+ VL + Sbjct 269 AGLAEKANLYYKLFINWTNQKIKQT-FVKRNMFDFKHIKPFQSHLVDAPGAMVLFATPGM 327 Query 300 --PNAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIP 357 A +V K+ + N +I PG + +L G Sbjct 328 LHAGASLEVFKKWAPNELNMTII-------PGYCVVGTVGNKLLTTGSDQQQQSKPQS-- 378 Query 358 NPLNVAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGE 412 + + ++ +E K + I NL S HA + LI+M NP ++ HGE Sbjct 379 QMVEIDKKTTIEVKCK------IHNLSFSAHADAKGILQLIKMSNPRNVILVHGE 427 >RecName: Full=Hydroxyacylglutathione hydrolase GloC; AltName: Full=Accessory type II glyoxalase; AltName: Full=Glyoxalase II 2; Short=GlxII-2 [Escherichia coli K-12] Sequence ID: P75849.1 Length: 215 Range 1: 49 to 134 Score:41.2 bits(95), Expect:0.008, Method:Compositional matrix adjust., Identities:26/88(30%), Positives:43/88(48%), Gaps:8/88(9%) Query 77 VVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRL------AKSEIKGEEYFEVTNP 130 ++ I L+HGHLDH+GA +LA HY VP++G A+S + G E + P Sbjct 49 LMQILLTHGHLDHVGAAAELAQHY-GVPVFGPEKEDEFWLQGLPAQSRMFGLEECQPLTP 107 Query 131 LYETNYGEIVQVSENLAIEFVQITHSIP 158 N G+ + + N+ ++ + P Sbjct 108 DRWLNEGDTISIG-NVTLQVLHCPGHTP 134 >RecName: Full=UPF0173 metal-dependent hydrolase APE_1117 [Aeropyrum pernix K1] Sequence ID: Q9YCZ5.1 Length: 242 Range 1: 35 to 149 Score:40.8 bits(94), Expect:0.011, Method:Compositional matrix adjust., Identities:35/115(30%), Positives:49/115(42%), Gaps:7/115(6%) Query 70 RPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGE------E 123 +P + V I ++H H DH+G VGK+A P + LA EI E E Sbjct 35 KPEEVEGVDLIVITHSHFDHLGDVGKIAAKNPGAKVLAVYEVADLAAEEIAKETGASKDE 94 Query 124 YFEVTNPLYETNYGEIVQVSENLAIEFVQITH-SIPQSSIVVIHTPEGAVVYACD 177 F + G +V L + F TH S+ ++ VI T EG V +A D Sbjct 95 LFNAGRVIGANIGGPVVLQDLGLKVAFTPATHSSVGVAAGAVIITGEGRVYHAGD 149 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Pectobacterium atrosepticum SCRI1043] Sequence ID: Q6D1V5.1 Length: 251 Range 1: 48 to 86 Score:40.4 bits(93), Expect:0.016, Method:Compositional matrix adjust., Identities:15/39(38%), Positives:25/39(64%), Gaps:0/39(0%) Query 79 AIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKS 117 AI L+H H DH+G V ++ HYP++P++G T + + Sbjct 48 AILLTHHHNDHVGGVSEILNHYPNLPVFGPKETAKCGAT 86 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Actinobacillus succinogenes 130Z] Sequence ID: A6VNK4.1 Length: 233 Range 1: 45 to 75 Score:40.0 bits(92), Expect:0.018, Method:Compositional matrix adjust., Identities:15/31(48%), Positives:21/31(67%), Gaps:0/31(0%) Query 77 VVAIALSHGHLDHIGAVGKLAPHYPDVPIYG 107 V A+ L+H H DH+G V ++PDVP+YG Sbjct 45 VEAVLLTHKHDDHVGGVAAFKRYFPDVPVYG 75 >RecName: Full=3',5'-cyclic-nucleotide phosphodiesterase; Short=3':5'-CNP; Short=PDEase; Flags: Precursor [Aliivibrio fischeri] Sequence ID: Q56686.1 Length: 330 Range 1: 24 to 204 Score:40.4 bits(93), Expect:0.021, Method:Compositional matrix adjust., Identities:45/191(24%), Positives:85/191(44%), Gaps:32/191(16%) Query 4 EINMIKIYTLGGYEEVGKNMTAV----EYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKD 59 + + + + GG ++ N+TA E + V++D G ++ +++ E QK + KD Sbjct 24 SFDTVTLGSKGGIQD--GNLTAFLIKSEADSNFVMLDAGSVVNGLIVSE----QKGAFKD 77 Query 60 LRKLGAIPDDRP------IRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIR 113 + +PD P + ++ +SH HLDH+ + +P PIYG T + Sbjct 78 I----TVPDSSPYTKVGYLLKDRIKGYFISHAHLDHVAGLIISSPDDSKKPIYGLAATNK 133 Query 114 -LAKSEIKGEEYFEVTN-----PLYETNY-----GEIVQVSE-NLAIEFVQITHSIPQSS 161 L K+ + N L + NY G V+E +++ + ++HS QS+ Sbjct 134 DLMKNYFNWSAWPNFGNKGEGFKLNKYNYVDLQPGVWSPVAETTMSVVSLPLSHSGGQST 193 Query 162 IVVIHTPEGAV 172 + ++ EG V Sbjct 194 VFILKDSEGDV 204 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Yersinia enterocolitica subsp. enterocolitica 8081] Sequence ID: A1JKA9.1 Length: 251 Range 1: 48 to 76 Score:40.0 bits(92), Expect:0.021, Method:Compositional matrix adjust., Identities:15/29(52%), Positives:21/29(72%), Gaps:0/29(0%) Query 79 AIALSHGHLDHIGAVGKLAPHYPDVPIYG 107 AI L+H H DH+G V L H+P++P+YG Sbjct 48 AILLTHHHNDHVGGVADLRRHFPEIPVYG 76 >RecName: Full=Cleavage and polyadenylation specificity factor subunit 3-II; AltName: Full=Cleavage and polyadenylation specificity factor 73 kDa subunit II; Short=AtCPSF73-II; Short=CPSF 73 kDa subunit II; AltName: Full=Protein EMBRYO SAC DEVELOPMENT ARREST 26 [Arabidopsis thaliana] Sequence ID: Q8GUU3.2 Length: 613 Range 1: 3 to 204 Score:40.4 bits(93), Expect:0.031, Method:Compositional matrix adjust., Identities:49/227(22%), Positives:89/227(39%), Gaps:48/227(21%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMS-SKDLRKLGAI 66 I LG +E+GK+ V NG+ ++ D G+ + + F +S S D Sbjct 3 IDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDF------ 56 Query 67 PDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTI-------------- 112 + + I ++H H+DH+GA+ P++ +V Y P + Sbjct 57 -------DNAISCIIITHFHMDHVGAL----PYFTEVCGYNGPIYMSYPTKALSPLMLED 105 Query 113 -RLAKSEIKGEEYFEVTNPLYET-------NYGEIVQVSENLAIEFVQITHSIPQSSIVV 164 R + +GEE T + + + +QV E+L I H + + +V Sbjct 106 YRRVMVDRRGEEELFTTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGH-VLGAVMVY 164 Query 165 IHTPEGAVVYACDYKFDNNHPYGERPDYKRLKELGKEGVKVLIAEST 211 + A+VY DY + G ++ + + +LI+EST Sbjct 165 AKMGDAAIVYTGDYNMTTDRHLGA-------AKIDRLQLDLLISEST 204 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Sequence ID: C4K7Z9.1 Length: 249 Range 1: 48 to 76 Score:39.7 bits(91), Expect:0.033, Method:Compositional matrix adjust., Identities:15/29(52%), Positives:21/29(72%), Gaps:0/29(0%) Query 79 AIALSHGHLDHIGAVGKLAPHYPDVPIYG 107 AI L+H H DH+G V +L +PD+P+YG Sbjct 48 AILLTHHHQDHLGGVPQLLRRFPDIPVYG 76 >RecName: Full=Integrator complex subunit 11; Short=Int11; AltName: Full=Cleavage and polyadenylation-specific factor 3-like protein; Short=CPSF3-like protein [Bos taurus] Sequence ID: Q2YDM2.2 Length: 599 Range 1: 4 to 449 Score:40.0 bits(92), Expect:0.039, Method:Compositional matrix adjust., Identities:110/501(22%), Positives:192/501(38%), Gaps:115/501(22%) Query 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67 I++ LG ++VG++ V G+ V++D G+ + +D F S + G + Sbjct 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMG---FSDDRRFPDFSYNT--RSGRLT 58 Query 68 DDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYP-----DVPIYGTPYT----------I 112 D + + +SH HLDH GA+ P++ D PIY T T Sbjct 59 D-------FLDCVIISHFHLDHCGAL----PYFSEMVGYDGPIYMTQPTQAICPILLEDY 107 Query 113 RLAKSEIKGEEYF-------EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVI 165 R + KGE F + + + + VQV + L I+ H + +++ I Sbjct 108 RKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVL-GAAMFQI 166 Query 166 HTPEGAVVYACDYKFDNNHPYGE------RP--------------DYKRLKELGKEGVKV 205 +VVY DY + G RP D KR +E ++ +K Sbjct 167 KVGSESVVYTGDYNMTPDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRE--RDFLKK 224 Query 206 LIAESTRVAEETKTPSEAVAK-----MLLEDFFLYEGMEADGLIATTF---ASHIARLQE 257 + E+ + P A+ + +LLE F+ ++A +T A+H +L Sbjct 225 -VHETVERGGKVLIPVFALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKL-- 281 Query 258 LIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVSKVLKEVSQARENY 317 I N+ R+ F+ R++ ++ IK SP + V A Sbjct 282 FIPWTNQKIRKT-FVQRNMFEFKH-------IKAFDRAFADSPGPM------VVFATPGM 327 Query 318 LLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSA----GVIPNPLNVAQRYALETKLR 373 L H G+ I + A E ++ V+ G + + + QR KL Sbjct 328 L-----HAGQSLQIFRKWAGNE------KNMVIMPGYCVQGTVGHKILSGQR-----KLE 371 Query 374 MKG-----VRM-IKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAELAEEEG 427 M+G V+M ++ + S HA + L+ PE ++ HGE + + + E+E Sbjct 372 MEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAKKMEFLKQKIEQEF 431 Query 428 YMIGKEVFISRNGHVVEIPGS 448 + ++ NG V +P S Sbjct 432 RV---NCYMPANGETVTLPTS 449 >RecName: Full=Hydroxyacylglutathione hydrolase; AltName: Full=Glyoxalase II; Short=Glx II [[Mannheimia] succiniciproducens MBEL55E] Sequence ID: Q65U07.1 Length: 236 Range 1: 47 to 90 Score:38.9 bits(89), Expect:0.043, Method:Compositional matrix adjust., Identities:18/44(41%), Positives:25/44(56%), Gaps:0/44(0%) Query 79 AIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGE 122 A+ L+H H DH G V +L +YPD+P+YG T + I E Sbjct 47 AVLLTHYHDDHTGGVEELKRYYPDIPVYGPAETADKGATHIVNE 90